Costertonia aggregata: HYG79_14530
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Entry
HYG79_14530 CDS
T06693
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cagg
Costertonia aggregata
Pathway
cagg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYG79_14530 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cagg03400
]
HYG79_14530 (ligD)
Enzymes [BR:
cagg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYG79_14530 (ligD)
DNA repair and recombination proteins [BR:
cagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYG79_14530 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QLG46511
UniProt:
A0A7H9ASQ0
LinkDB
All DBs
Position
complement(3153889..3156306)
Genome browser
AA seq
805 aa
AA seq
DB search
MNLKEYNEKRDFAKTPEPKGETPSEVNVQRFVIQRHQARALHYDLRLEINGTLKSWAIPK
GPSMNPNDKRLAVRTEDHPIKYLHFHGTITKGNYGAGEIIIWDSGTFEIDRTEMDMPAHE
QLAKGNLKLIFHGKFIKGNFALVKTGMRNGKESWLLIKKKDAFSTDSLYNAEALGPSSDP
KTKQYPKTIQPNTILQPMLASSTKEIFNDPDWLYELKWDGYRVLAHISDKGVLLQLRNGI
NLNTKFPKLAKELESIEHECILDGEVVILDESGVSQFGELQNYPDSMGVLRLYVFDMIYL
NGISMLDLPLTDRKSLIPEVIQGLELTKYCDHIEGMGAALYQKAIDAGMEGVMAKLKDST
YTLATRTEKWLKIKSVDSLDALICGYTDSVGGGVAFGSLILGVRVNDEFTYIGNCGSGFS
ENRRKELLRQFEPYRRDENPFGKKLPLKGRKPNWMVPTLSCEVNFSERTKNGLLRNPVFE
RLLNAPVQEADSVPKRLQRKSLPSREIIEIDGLPVSITNIEKVYWPDSGLTKYDLIDYYL
QVSKFILPHLFDRPQSLHRHPNGILEEGFYQKDNENVPEWMQTFTLYSKSSERDIEYLLC
QNTASLIYMANLGCIEINPWNSRVGKLDFPDYGIIDLDPPEGMKFKNVVRIAKEFKSVMD
IAEIQGYCKTSGSKGLHIYIPMGAKYTYEEVRNFIKLLCYFVQQRLPRISTLERRIKKRE
GKIYLDYLQNRKGHTVASVYSVRPLAGAPLSMPIEWSELDGKFSAQEFKMKNMIQRLERL
WDLFQPLLTESINMESCLENLKELG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaaggaatataacgaaaagcgcgattttgcaaagaccccagagccaaaaggg
gaaactccttcagaggttaacgtacaacgatttgttatccaacggcatcaagccagggcc
ttgcattatgatttgcggctcgaaatcaatggaaccttgaagagctgggcgataccgaaa
gggccatcgatgaaccccaacgacaagcgattggccgttcgtaccgaagatcatcccata
aaatatttgcattttcacggaacgataacgaaagggaattatggggcgggagaaataatc
atttgggattccgggacttttgaaatcgaccgcaccgaaatggatatgcctgcccatgaa
caactcgccaaaggaaatctaaaattaatatttcacggaaaatttatcaaaggaaatttc
gcgttggtcaaaaccggcatgcgaaacggtaaggaaagctggctgctcatcaaaaaaaaa
gatgccttctctacagattcgttatataatgccgaagctttagggccatcatccgatcct
aaaacaaaacaatatccaaaaactatacagcccaatacgattctacagcccatgctcgca
tcttcaaccaaggaaattttcaatgaccctgattggttgtatgaactgaaatgggacggg
tatcgggtattggcccatatttccgacaaaggtgtgttgttgcagttgcgtaacggtatt
aatttgaacactaaatttccgaaacttgcgaaggaattggaatccattgaacatgaatgc
atcttggacggggaggtagtaatattggatgaatcgggcgtatcgcagtttggggaatta
cagaattatcccgattcgatgggagttcttcgcttatatgtcttcgatatgatttatctg
aacgggataagcatgcttgatctaccattgaccgatagaaaaagcttaattcccgaagtt
atccaagggttggaacttacgaaatattgcgaccatatcgaggggatgggtgcggcactc
tatcaaaaagccatcgatgcgggcatggaaggcgtcatggccaaacttaaagattcgacc
tacacgctcgccacacgcacagaaaaatggctcaaaatcaagtccgttgacagcctcgac
gcactaatctgtggctatacggattccgttggcggtggtgttgcattcggttccttgatt
ttgggggttcgtgtgaatgatgaattcacttatatcggaaattgtggatccgggttttca
gagaatcgacgaaaagagctattgcgccaatttgaaccttatcgaagggatgaaaatccg
tttggaaaaaagttgccccttaaaggccgtaaaccgaattggatggtgcccacattgtcc
tgtgaagtaaatttttccgaacggaccaaaaacggcttgctacggaatcccgtttttgaa
cgattgctcaacgcgccggttcaagaggcggattccgtccccaaaagattgcaaaggaaa
agcttgccatcaagagagataatcgaaatagatgggttgcccgtctccataacgaatatc
gagaaagtgtattggccagattcggggctgaccaaatacgacctcatcgattactacctg
caagtctccaagtttatcttaccacatctgttcgatcggccgcagagcctgcaccgccat
ccgaatggcattctagaagaaggtttctaccaaaaggacaatgaaaacgtgccggaatgg
atgcaaacctttaccctctattcaaaatcctcggagcgagatatcgaatacctactatgc
caaaatacggcctcgctgatttatatggccaatttgggctgcattgaaatcaacccttgg
aattcacgggtcggtaaactcgattttccggattatggtattatcgacctagatccaccc
gaaggaatgaaattcaagaatgttgttcggatcgcgaaagaatttaaatccgtgatggat
atcgctgagattcaaggctactgcaaaacctccggttcgaaagggctacatatttacatt
ccaatgggagcgaaatacacctatgaagaagttcgcaattttataaaattgctctgctat
ttcgtacagcaaagacttccaagaatcagcaccttggaacggcggataaaaaagagggag
ggtaaaatctatctcgattacctacaaaatcgcaaaggccataccgttgcttctgtgtat
tcggtgcgacccttggcaggcgctcctttgagcatgcccatcgaatggagcgaactagac
ggtaaattttccgctcaggaattcaagatgaaaaatatgattcaacgattagagaggtta
tgggatctctttcaaccgctcttaaccgaatcgattaatatggaatcttgccttgaaaac
ttaaaggaattaggttaa
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integrated database retrieval system
