Catenulispora acidiphila: Caci_0188
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Entry
Caci_0188 CDS
T00967
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cai
Catenulispora acidiphila
Pathway
cai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Caci_0188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cai03400
]
Caci_0188
Enzymes [BR:
cai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Caci_0188
DNA repair and recombination proteins [BR:
cai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Caci_0188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACU69143
UniProt:
C7QJ01
LinkDB
All DBs
Position
201624..205172
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLSGLLDAVSADPGVAALLEAAATAGRTSFDLAAPRSVRPFALAALARAQGPAGRPVLA
VTATGREAEDLVAALRGLLDPETVVDFPSWETLPHERLSPRSDTVGRRLAVLRRLVHPDA
ATEGAGALKVVVAPIRSVLQPQVKGLADLVPVAARTGAEIDLDDLVNRLAAAAYTRTDLV
DKRGEFAVRGGIVDVFPPTEEHPLRLEFWGDQIEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDEVRKRAAALMEDHPELADILGKVSEGIGVEGMESLAPVLVDDMELLIDLLPAGS
PIVLCDPERVRTRAADLAATSAEFLDASWAATAGGGQTPIDLGAASLKDLASVREHAITL
GLPWWSLTPFAPDLELLPEEDATEISEIHDTEQYGGDTGRALADVRARISEGWRVVLVTQ
GHGSADRLVEVLKGADIGARYVPELDTVPEPALATVATASIEHGFIAADLKLWVITEQDV
SGQRTATKDMSRMPSRRRNVIDPLQLKAGDPVVHEQHGVGRYVEMAQRTVAGATREYLVI
EYAAAKRGQPGDRLFVPTDQLDQVTKYVGGEAPSLHRLGGADWQKAKSRARKAVKQIAGD
LVKLYSARMAAPGHAFAADTPWQRELEDAFPYVETPDQLACIDEVKSDMEKPVPMDRLIC
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFAERYAQFPVTLKGLSRFQ
TDKEAAEVLRGVADGSVDVVIGTHRLLANSVKFKRLGLVIVDEEQRFGVEHKEQLKQARA
NVDVLTMSATPIPRTLEMAVTGIREMSTIQTPPEERHPVLTFVGPYEERQISAAIRRELL
REGQAFYIHNRVESIDRAASRLRALVPEARIATAHGQMNEHVLEKLIVDFWNKEYDVLVC
TTIVESGIDITNANTLIVERADNFGLSQLHQLRGRVGRGRERAYSYFTYPPEKPLTETAH
ERLATIAQHTDLGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVGFDLYIRMVGEAVEEYR
AQAEGREVEEQVEIRVDLPVDAHLPHDYIPGERLRLEAYKRIAGATTHEELAEVRQEFTD
RYGRFPQPVENLLAVAAFRIDARAAGLTEVAVQGNFVKFGPVKLRESQEMRLLRLFPKTL
VKAATDTMLVPKPMTARIGGQPLRDQELLGWARDLIDAVLKM
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgtccggacttcttgacgccgtatccgccgacccgggggtcgccgcgctgctg
gaagcggccgcgaccgccgggcgtacctccttcgacctggccgcgccccgctcggtccgg
ccgttcgcgctggccgcgctggcccgcgcgcaaggcccggcgggccgtccggtgctggcc
gtgaccgccaccggccgcgaggccgaggacctggtcgccgcgctgcgcgggctgctggac
cccgagacggtcgtggacttcccgtcctgggagacgctgccgcacgagcggctctcgccg
cgcagcgacaccgtcgggcgccggctggccgtgctgcgccgcctggtccaccccgacgcc
gccaccgagggcgccggcgccctgaaggtggtcgtggcgccgatccgctcggtgctgcag
ccacaggtcaagggcctggccgacctggtcccggtggcggcgcgcaccggcgcggagatc
gatctggacgacctggtgaaccggctcgccgccgccgcgtacacccggacggacctggtg
gacaagcgcggcgagttcgcggtccgcggcggcatcgtcgacgtcttcccgccgaccgag
gagcacccgctgcggctggagttctggggcgaccagatcgaggagatccgctacttcaag
gtcgccgaccagcgctcgctggaggtcgccgagcacgggctgtgggcgccgccgtgccgc
gagctgctgctcaccgacgaggtccgcaagcgggccgcggcgctgatggaggaccacccg
gagctggccgacatcctcgggaaggtctccgagggcatcggcgtggaggggatggagtcg
ctggcgccggtgctggtcgacgacatggagctcttgatcgacctgctgccggccggctcg
ccgatcgtgctctgcgaccccgagcgggtgcggacccgcgccgccgacctggccgccacc
tccgcggagttcctggacgcctcctgggccgccaccgccggcggcgggcagaccccgatc
gacctcggcgcggcctcgctgaaggacctcgcctcggtccgcgagcacgccatcaccctg
ggcctgccctggtggtcgctgacgcccttcgccccggacctggagctgctgccggaggag
gacgccaccgagatcagcgagatccacgacaccgagcagtacggcggcgacaccggccgc
gcgctcgccgacgtccgggcccgcatctccgagggctggcgggtggtgctggtcacccaa
ggccacggctcggccgaccgcctcgtcgaggtgttgaagggcgctgacatcggcgcgcgc
tacgtcccggagctggacaccgtcccggaaccggcgctggcgaccgtggccaccgccagc
atcgagcacggcttcatcgccgcggacctcaagctctgggtgatcaccgagcaggacgtc
tccgggcagcgcacggcgaccaaggacatgtcccgcatgccctcccggcgccgcaacgtc
atcgacccgctgcagctcaaggccggggacccggtcgtgcacgagcagcacggcgtgggc
cgctacgtggagatggcgcagcgcaccgtcgccggcgcgacccgcgagtacctggtgatc
gagtacgccgcggccaagcgcggccagcccggcgaccggctgttcgtccccaccgaccag
ctggaccaggtcaccaagtacgtcggcggcgaggcgccctcgctgcaccggctcggcggc
gcggactggcagaaggcgaagtcccgggcccgcaaggcggtcaagcagatcgccggggac
ctggtgaagctgtacagcgcgcggatggccgcgccggggcacgccttcgccgcggacacg
ccgtggcagcgcgagctggaggacgccttcccctacgtggagacgccggaccagctggcg
tgcatcgacgaggtgaagtccgacatggagaagccggtcccgatggaccggctgatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcag
gacggcaagcaggtggcggtgctggtgccgaccacgctgctggtgcagcagcacttctcg
acgttcgccgagcggtacgcgcagttcccggtgaccctcaagggcctgtcccggttccag
accgacaaggaggccgccgaggtgctgcgcggcgtggccgacggctcggtcgacgtcgtc
atcggcacgcaccggctgctggcgaactcggtgaagttcaagcgcctcggcctggtgatc
gtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagcaggcgcgggcc
aacgtggacgtgctgaccatgtccgccacgccgatcccgcgcaccctggagatggcggtc
accggcatccgggagatgtccacgatccagaccccgccggaggagcggcacccggtgctg
accttcgtcgggccgtacgaggagcggcagatctccgccgcgatccgccgcgagctgctg
cgcgaggggcaagcgttctacatccacaaccgggtggagtccatcgaccgcgcggcctcg
cggctgcgcgcgctggtgcccgaggcgcggatcgcgaccgcgcacggccagatgaacgag
catgtgctggagaagctgatcgtcgacttctggaacaaggagtacgacgtcctggtctgc
accacgatcgtggagtccggcatcgacatcaccaatgccaacaccctgatcgtcgagcgc
gccgacaacttcggcctgtcccagctgcaccagctgcgcggccgggtcgggcgcgggcgc
gagcgcgcgtactcctacttcacctacccgccggagaagccgctgaccgagaccgcgcac
gagcgcctggcgaccatcgcgcagcacaccgacctcggcgccggcatgtacgtggcgatg
aaggacctggagatccgcggcgccggcaacctcctgggcggcgagcagtccgggcacatc
gagggcgtcggcttcgacctctacatccgcatggtcggcgaggcggtcgaggagtaccgc
gcgcaggccgagggccgcgaggtcgaggagcaggtggagatccgcgtggacctgccggtc
gacgcgcacctgccgcacgactacatcccgggcgagcggctgcggctggaggcgtacaag
cgcatcgccggcgccaccacccacgaggagctcgccgaggtccgccaggagttcacggac
cgctacggacgttttccacagcctgtggaaaacctcctcgcggtcgcggcgttccgcatc
gacgcgcgcgcggccgggctcaccgaggtcgcggtccagggcaacttcgtgaagttcggc
ccggtgaagctgcgcgagtcccaggagatgcggctgctgcgcctgttcccgaagaccctg
gtgaaggcggccaccgacaccatgctggtccccaagccgatgaccgcgcggatcggcggg
cagccgctgcgcgaccaggaactgctgggctgggcccgggacctgatcgacgcggtgctg
aagatgtag
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