Campylobacter iguaniorum: CIG1485E_0789
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Entry
CIG1485E_0789 CDS
T03252
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caj
Campylobacter iguaniorum
Pathway
caj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIG1485E_0789 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caj03400
]
CIG1485E_0789 (mfd)
Enzymes [BR:
caj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIG1485E_0789 (mfd)
DNA repair and recombination proteins [BR:
caj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIG1485E_0789 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AII14634
UniProt:
A0A076FFK8
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All DBs
Position
801148..804105
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AA seq
985 aa
AA seq
DB search
MQAKIYEYFKQNKNKYEILVTNDEKEALSAYDAASFAGVECFVLPDFRAVKGDDLRAFNA
ELLEISKALNSFYKSQNKNKLLIAPVRTLLNKLPAKSNLKTKTLNFGDTLNLNELKDEFL
GLGYNFVDIVCERGEVRVSGDIIDIFDISSDSPVRILLDIDTVESIRYFDPVSQKSSKDE
LESIEISPFLATLDKDELQSVNEKLEHIQSNSLINDLNSFGFWLIDGFIDYFESFKCVLA
SEIEAEEIETDRNLDFLKSVDTLPEAKEFRDLEATLNADFALFHKNKKITVLSKNESSFN
ALNLSEFKNITLKISPLILNIISPDEVIISLNSRIKKQRLKKASLVIDELKAGDFVVHSE
YGIGKFMGLDLITVLGSKKEFVTIAYQNDDKLLLPVEHLNMIDRYIAGSGSVVSLDRLGK
ASFAKIKEKVREKLFIIASKIIAMAAKRELVEGVKFSKDSDFAKFKLQAGFAYTDDQETA
TSDIANDLKSGRVMDRLLSGDVGFGKTEVAMNAIYLCVKSGYQALFFVPTTLLSSQHYKS
LIERLTPFGIKVRRLDRFTSTKEKAIIKQELMNSEPLVVIGTHALLSLEAPNLGLIVIDE
EHKFGVKQKEKLKEISQNSHILSMSATPIPRSLNMALSQVKSYSTLTTPPLDRQDVRTFV
KEWDEKLVKEVVLREIRRNGQVFYVHNLIADMPSIERELKALMPNLKILTLHSKIDPKTT
EDEMIKFANGGYDLLLCTSIVESGIHLPNANTIIIDEANKFGMADLHQLRGRVGRSSKQG
YCYFLVKDKDTLGSDAIKRLVALESNSFLGSGSVLAYHDLEIRGGGNLIGEAQSGHIEAI
GYSLYLKMLEDEINSLLNKRTNEHKEIDLKLSVNAFLNSDLIAEDRLRLEIYRRLSKCED
VANVYEIGAEIEDRFGKLDIYTKQFLDIIIIKILASKQGFKAVSNYEQNISLTKMDDTKV
ILKSRSKDDDDVLAEILVYLRKNEK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaagatttatgagtattttaagcaaaacaaaaacaaatacgaaatactagta
acaaacgatgaaaaagaagcccttagtgcttatgacgcggcgagtttcgctggagtagag
tgctttgtcttgcctgattttagggcggttaagggcgatgatttacgcgcgtttaatgct
gagcttttagaaataagcaaagctctaaacagcttttataaaagccaaaacaaaaacaaa
cttttaatcgctccggttagaactcttctaaacaaactcccagccaaatcaaatttaaaa
acaaaaaccttaaatttcggtgatactctaaatttaaatgagttaaaagatgagtttttg
gggcttggatataattttgttgatatagtttgtgagcgtggcgaagtaagagtaagtggc
gatataattgatatttttgatatttctagcgatagtcctgttaggattttgctagatatc
gacacggttgagagcataagatattttgatccagtcagccaaaaatcaagcaaagatgaa
cttgaaagcatagaaatctctccatttttagccactttagacaaggacgagctgcaaagc
gtaaacgaaaaactagagcatatccagtctaattcgctgataaatgatctaaactcattt
ggattttggctgattgatggatttattgattattttgagagtttcaaatgtgttttggct
agtgagattgaggctgaagagatagaaactgataggaatttggattttttaaagagtgtg
gatactttgccagaggcaaaagaatttagagatttggaagccactttaaacgctgatttt
gcactttttcataaaaacaaaaaaatcacagttttaagcaaaaacgaaagcagttttaac
gccttaaatttgagtgagtttaaaaacataactctaaaaatcagcccacttatcttaaac
atcataagccctgatgaagtcatcatctctctaaactcacgcatcaaaaagcaaaggctc
aaaaaagcaagtctagtcatagatgagctaaaggctggggattttgtcgtgcatagcgag
tatggtataggcaaatttatggggttagatctcatcacagtgcttggaagcaagaaagag
tttgtcaccatagcctaccaaaacgacgacaagctcctcttgccagtcgaacacctaaat
atgatagatcgctacatcgcaggaagtggttcagtggtgagtcttgatagacttggcaag
gcgagttttgctaaaatcaaagaaaaagtcagagaaaaattatttataatcgctagcaaa
atcattgcaatggcggcaaaaagagagctagtagaaggcgtcaaatttagcaaagatagt
gattttgctaaatttaagctccaagctggttttgcctacacagatgatcaagaaactgcc
acaagtgacatagctaacgacttaaaaagtggtagagtcatggatagacttcttagtggg
gacgttggatttggcaagactgaagtggctatgaatgcgatttatctatgtgtcaaaagt
ggctatcaagctttgttttttgtcccgacaaccttactttcaagccaacactacaaaagc
ttaatagaaagactcacgccatttggtataaaagtaagaaggcttgatagatttacaagc
accaaagaaaaggcgatcatcaagcaagagctgatgaatagtgagccactagtagtcatc
ggcacacacgcacttcttagccttgaagcaccaaatttggggctaatagtcatcgatgaa
gagcataaatttggcgtcaaacaaaaagaaaaactcaaagaaattagccaaaactcacac
atcttatcgatgtcagccacaccgatcccaagaagcctaaatatggctctaagtcaggtc
aaaagctacagcacgctcaccacgccaccgcttgatcgccaagacgtgaggacatttgtc
aaagagtgggatgaaaagctggtaaaagaagtcgtattgcgtgagattcgcagaaacggt
caggtattttatgtccataatcttatagctgatatgccaagcattgagcgtgagctaaag
gctttaatgccaaatttaaagattctaacacttcatagcaaaatagatccaaaaaccacc
gaagatgagatgattaaatttgcaaatggcggatatgatttattgctttgcaccagcatt
gtcgagagtggaatccacttaccaaacgcaaatacaatcatcatcgatgaagcaaataaa
tttggtatggcagacttacaccagctaagaggcagggtcggaagaagctccaagcaagga
tattgctactttctagtcaaggacaaagacacgcttggaagtgacgctataaaacgcctt
gtagcgcttgagagcaactcatttttgggttctggctcagtgctagcttatcatgattta
gaaatcagaggtggtggaaatttgataggcgaagcacaaagcggtcacatcgaagccata
ggctactcactgtatctaaaaatgcttgaagatgagataaactcactactaaataaacgc
accaacgaacacaaagaaatagatttgaagcttagtgtaaatgcctttttaaacagtgat
ttgatcgcagaagataggctaaggcttgagatatatagacgtcttagcaagtgtgaagat
gtcgcaaatgtctatgaaataggcgctgaaatagaagatagatttggtaagctagatatt
tatacaaagcaatttttagatataattatcataaagattttggctagcaagcaaggattt
aaagcagttagcaactacgagcaaaacatatctctaacaaaaatggacgacacaaaagtc
atcttaaaatcaagaagcaaagacgatgatgacgtgctagctgagattttggtatatcta
aggaaaaatgaaaaatga
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