Candidatus Contubernalis alkalaceticus: HUE98_00555
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Entry
HUE98_00555 CDS
T07972
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
calk
Candidatus Contubernalis alkalaceticus
Pathway
calk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUE98_00555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calk03400
]
HUE98_00555 (mfd)
Enzymes [BR:
calk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUE98_00555 (mfd)
DNA repair and recombination proteins [BR:
calk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUE98_00555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
T4-gp15_tss
MutS_II
Motif
Other DBs
NCBI-ProteinID:
UNC90703
LinkDB
All DBs
Position
119768..123307
Genome browser
AA seq
1179 aa
AA seq
DB search
MCGEFILNLLTEDENFQTVLENIEQHMPSQLIYGIDGSQKNLVMTAVKVNTGRPVLVVTT
DLFNAEKIYENFLNFFSGEKVLLFPARESIFYESISHSREITEQRLQVLEKITAGGDFLV
IAPASALMSLLPPKDLWAVSSLKISEKSSFSLEELTQRLVQLGYERSPLVEGRGQFSLRG
GILDIFPSTLRNPVRIEFFGDEAESLREFDLSSQRSKKSLREVHINPVQELILDQGAFLR
GRVEIEKDLEKRLTALNRAGEMEAASKLASKVEYHLEKIKEKIYFSEIEQYLPYFYPRLH
TIMDYLPKDALVFLDEPVHILENSQKLTFEMEETNSSMLVEGAILPGQTKLNKSIHDFIF
THKAPYLSFSLLMRKIPGFTPQSIVTIANKNMPRFHGQWDFLRGEINHWFKEGYRVFLLA
SSKERGKEAAHSFEEENIRASFTSTPENILPGTVGVINCNLENGFILPETKTALISEQEL
IPKYKKKKVWKTSKEGITISDYHDLEMGDFVVHEQHGIGQYLGIKTLEINQLNKDYLYIK
YAGEDKLFIPTDQIGLVKKYIGGEGRKPKLHGMGSSEWSRVKSRVKESVQKLAQELLKLY
AVRESVQGHAYSPDHNWQREFEDRFPFEETPDQLKAISDVKKDMENKKPMDRLICGDVGY
GKTEIALRAAFKAVMEHKQVAFLVPTTILAQQHYRSFKERFEGFPVNIEVLSRFRKPSEQ
KEVVKQVKSGWVDIIIGTHRLLSSDIHFKDLGLLIIDEEQRFGVKHKEKIKMLRKNVDVL
TMTATPIPRTLYMSLVGVRDLSVIETPPENRYPIQTYVVEYSEALIREALQRELNRGGQV
FFVYNRVETIEKRGEKLKQIIPEARVVIGHGQMPEARLEKNMYQFLNKDYDILLSTTIVE
AGLDIPNVNTMIIYDADKMGLSQLYQLRGRVGRSNRLAYAYLTYKKDKVLSEVAEKRLQA
IKEFTELGSGFKIAMRDLEIRGAGNILGPEQHGFIVTVGFDLYCQLLEQSINELKGFPEE
ETPEVKIELNINAFIPASYIHHHSQKIYIYQKIAAVESPEETADVEREMIDRYGPVPEPV
KNLLKIARLKVLAGQLKISSITQEKTQVKVKFYSDFKGRGEDLLQMASSFSEEVSLQVGQ
GVSFKLNVQGVQENLLVDHIERFCQKLFCLADDRAIHYN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtgaatttattttaaatcttctaacggaagatgaaaattttcaaacagtttta
gaaaatatagagcaacatatgcctagtcagctgatatatgggatagacggcagtcagaaa
aacctggttatgactgctgttaaggtaaataccgggcgtccggtgctggtggttacgact
gatctttttaatgcggagaagatttatgagaattttttgaatttcttttctggggagaaa
gttctgcttttccctgccagggagagtattttttatgagtccatttctcacagtagagag
ataacagagcagcgtctgcaggttttggaaaaaataacggccggaggtgactttttggtc
atcgccccagcatcggccctgatgtctcttttgcctcccaaagatctttgggcagtttct
tccttaaaaatttcggagaaatcaagtttttccctggaagaactgacccagcggttagta
cagctgggatatgaaaggtctcccctggtagagggcagggggcagttcagccttcgggga
ggtattttagatatttttccctccactttacggaatcctgtaagaatagaattctttgga
gatgaagcagaatctcttcgggagtttgacctttcttcccagaggtctaaaaaaagcctc
agggaagttcacataaatcctgtgcaggagctaattttggatcaaggggcatttctgcgg
ggcagggtagagattgagaaggatttagagaagagattgaccgctcttaacagggctggg
gaaatggaggctgcctcaaaacttgcatctaaagtagagtatcatttggaaaaaattaaa
gaaaaaatttattttagtgaaattgaacaataccttccttatttttatccccggctgcat
accattatggattatcttcctaaagatgctctggtgtttttggatgaaccggtgcatatt
ttagaaaacagccaaaagttgacctttgagatggaagaaaccaacagctctatgctggtt
gagggggctattcttccgggtcaaacaaaactgaataaaagtattcatgactttatattt
acccataaggccccatacctttctttttcccttcttatgcgtaaaattccagggtttact
ccccaaagcattgttaccattgctaataaaaatatgccccggttccatgggcagtgggat
tttttgagaggggaaatcaatcattggtttaaggaaggttatcgggtatttcttctggct
tcctccaaagaacgaggaaaagaagccgcccattcctttgaagaggagaatatcagggcc
tcttttacctctaccccggagaatattttaccgggaacagtgggggttattaactgtaat
ttggaaaacggttttattttaccggaaacaaaaacagctctgatttcagagcaggaattg
attccaaaatataaaaaaaagaaagtctggaagacctctaaagaaggcattaccatttct
gattatcatgatctggagatgggggattttgtggtccatgaacagcatgggattggtcaa
tacctgggcattaaaacgttggaaatcaaccagctgaataaagattacctttatattaaa
tacgccggtgaggataaactctttatccccactgaccagattggactggtaaaaaaatat
atcggtggggaaggcaggaaaccaaaactccacggtatgggcagcagtgaatggtctcgg
gttaaaagcagggtaaaagaatctgtgcagaaactggctcaggagcttttgaagttatat
gcagtcagggaatctgtgcaggggcacgcgtattcacctgatcacaactggcagagggaa
tttgaagaccgctttccttttgaggaaactccagaccagctgaaagccatcagtgatgta
aaaaaagatatggaaaataaaaaacctatggatcgtttaatctgtggtgatgtgggttat
ggtaagacggaaattgcattacgggcagcatttaaagcagtgatggaacataagcaggta
gcattcctggtccctactactattttggcacagcagcattaccggagttttaaagaaagg
ttcgaaggttttcctgtaaacattgaagtgttaagccggtttagaaaaccctcagagcaa
aaagaggttgtaaaacaggtcaaatcagggtgggtagacatcataatcggaactcaccgc
ctgttatcttcagatatacattttaaagatttaggccttttaatcattgatgaagaacag
cgttttggagttaaacataaggaaaaaatcaagatgctcaggaaaaatgtagatgtgctg
actatgactgctacccccattcctcgaactctttacatgtctctggtgggagtcagggat
ctaagtgtaattgaaactccaccggaaaaccggtaccctattcaaacctatgtggtggag
tattcagaggcattgatcagggaagctcttcagagagagcttaatcggggagggcaggta
ttcttcgtctataatcgggtggaaaccatagaaaaacggggagaaaaattgaagcagatc
atacccgaggccagggttgtcattggacatggacagatgcccgaggccaggttggaaaaa
aacatgtaccagtttctaaacaaagattatgatatacttcttagcactaccattgtggag
gcgggtttggatattcccaatgtaaatacaatgattatttacgatgccgataaaatgggt
ttatctcagctgtaccaactgagggggagagtgggaaggtcaaaccgcctggcttatgct
tatcttacttataaaaaggataaagttttatctgaggtggcagaaaagaggctgcaggcc
attaaagagtttacggagctggggtcggggtttaaaatcgccatgagagacctggaaatc
aggggagccggtaatattctaggtccggaacagcatggttttatagttaccgtaggtttt
gatctttattgtcaacttttagagcagagcataaatgaacttaagggttttcctgaagaa
gagactcctgaggtaaaaatcgagttaaatataaatgcttttatacctgcttcttatatt
caccatcacagccaaaaaatatatatctatcaaaaaatagcagcggtagaatctccggaa
gagacagcagatgtggagagggaaatgattgaccgttacggccccgttcctgaaccggta
aagaatctcttaaaaattgcccggttaaaagtattggcagggcagttgaaaatatcttca
ataactcaggaaaaaacccaggttaaggtaaaattttattctgatttcaagggacgggga
gaggatctgctgcagatggccagcagtttttctgaggaagtcagcctgcaggtaggtcaa
ggggttagttttaaattaaatgtacaaggagtccaggagaatcttttagtggaccatatt
gaaagattttgtcaaaaactcttttgccttgcggatgatagagcaatccattataattaa
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