Candidatus Contubernalis alkalaceticus: HUE98_15670
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Entry
HUE98_15670 CDS
T07972
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
calk
Candidatus Contubernalis alkalaceticus
Pathway
calk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUE98_15670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calk03400
]
HUE98_15670
Enzymes [BR:
calk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUE98_15670
DNA repair and recombination proteins [BR:
calk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUE98_15670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UNC93959
LinkDB
All DBs
Position
complement(3147447..3148364)
Genome browser
AA seq
305 aa
AA seq
DB search
MESFFEVNGQELRLTNLDKVLWPREGFTKSQLIKYYLEAAPYLLKYLRNRPVVFQRFPGG
IQEKGFYQKNFPLEGPSWVKTFSINSRSSSKVTRYILVEDVQTLAWLGNQACIEIHPWFS
SLQSLENPDFAVFDLDPMEESTFEQVCSVSLTIRDLLVKVGLKCYPKTSGSTGLQVYVPL
KPRYSYEEVRKFVSYFCSLVHDIHPQITTMERKVDKRQGKIYLDYLQNAWGKTINAPYSI
RPHPGAPVSTPLLWEEIQQGNITSSSAFHLLNIKERLEAKGDLFEGVLTGKQSIDGILEN
LMVSK
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttttttgaagttaatggccaagagttgaggttaactaatttagataaagta
ctctggccccgtgagggctttaccaaatctcaactgattaaatattatctggaggctgct
ccttatttattgaagtatttaaggaacaggccggtggtttttcaaagatttcccggagga
atccaggaaaaaggattttatcaaaagaattttcctttggagggtccatcctgggtgaaa
actttttccattaattcccgaagcagctccaaggtgacccgttatattcttgtggaggat
gtgcagaccctggcctggttgggcaatcaggcttgtattgaaattcacccctggttttcc
agtctgcagagtttggagaatccagatttcgcagtgtttgatttggatcctatggaggaa
tctacctttgagcaggtctgcagtgtttccctgactatcagggaccttctggtgaaggtg
gggctcaagtgttaccccaagacctcgggctctacgggattacaggtatatgtgcctctt
aagcctcgttattcttatgaggaggtaaggaaatttgtatcctatttttgttctttagtt
catgatattcaccctcagattactaccatggaaaggaaagtggataagagacagggtaag
atttacctggattatcttcaaaatgcctggggcaaaaccataaatgcaccttatagtata
agaccccatcccggggcaccggtttctacccctctgttatgggaagaaatccagcagggt
aatattacatcctcttcagcttttcatttgttgaatataaaggaacggctggaggctaaa
ggtgacctctttgaaggtgtgctgacaggcaagcagagtatagatggtatcctggagaat
ctaatggtttcaaaataa
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