Calothrix sp. PCC 7507: Cal7507_6092
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Entry
Cal7507_6092 CDS
T02358
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
calo
Calothrix sp. PCC 7507
Pathway
calo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cal7507_6092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calo03400
]
Cal7507_6092
Enzymes [BR:
calo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cal7507_6092
DNA repair and recombination proteins [BR:
calo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cal7507_6092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
PsbQ
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFY36393
UniProt:
K9PTH7
LinkDB
All DBs
Position
complement(6910096..6913563)
Genome browser
AA seq
1155 aa
AA seq
DB search
MAFSSIVRALARSPLTTEFLSKLNRQQELRLNGVPRLPKGLVASALAQNSDRNLFVVCAT
LEEAGRAYAQLEAMGWKNVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKSQESKMAI
VATTAALQPHLPPPDAFVPFCLTLNKGLEFDLNTFSTKITTLGYERVPLVETEGQWSRRG
DIVDIFPVASELPVRLEWFGDEIEQIREFDPATQRSALDKINQIILTPTSFTPIILEALK
NSAEFQTFTTELDSDSALLEGSRRFLGLAFEQPASVLDYLGENTLIAIDEPEQCYAHSDR
WVENAEEQWSVTCTERSRGISELPKIHRSFDESLAAAAQFQKLYLSELAEENSGINLASR
PVPITPHQFAKLADTLRQERDRNFSTWLISAQPSRSVSLLQEHDCPAQFIPNPRDYLAIE
KLQINHIPIALKYSGLAELEGFILPTYRIVVVTDREFYGQHSLATPSYIRKRRQATSKQV
DPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYLVVQYADGLLRVAADQVGSLSRFR
ATGDKAPELHKMTGKAWENTKNKVRKAIKKLAFDLLKLYAARSQQQGFTYPQDMPWQEEM
EDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVA
LLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRTAEERRDIQKRLATGELDVVVGTHQL
LGKGVTFRDLGLLVVDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPRTLYMSLSGIREM
SLITTPPPSRRPIKTHLAQMNPESIRTAIRQELDRGGQVFYVVPRVEGIEETTTKLRETI
PSARFAVAHGQMDEGQLESTMLTFNNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGL
SQLYQLRGRVGRAGIQAHAWLFYPQQRALSDAARQRLRAIQEFTQLGSGYQLAMRDMEIR
GVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPQVSDTQIDLNLTAFIPADYIL
DLDQKMSAYRAVAAAKSKEELTQIGVDWSDRYGAIPVPASQLLRVMELKQLAKKLGFSRI
KPENKQHIILETPMEEPAWNLLAANLPENLRSRFVYSPGKVTVRGLAVMKADKQLQSLID
AFGKMQGALPEAVVV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgccttggcgcgatcgcccctcactaccgaattcctc
tccaagctcaaccgccaacaagaattgcggttaaatggtgttccccgtctccctaaaggc
ttggtggcttcggcattggcgcaaaattctgacaggaatttgtttgtggtgtgtgccacg
ctagaggaagcaggacgcgcttatgcacagttagaagcgatgggatggaagaatgtacac
ttttatcccacctcggaagcgtctccctatgaaccctttgatccggaaacagaaatgacc
tggggacagatgcaggttttggcggatttggtcaagagtcaagagtcaaaaatggcgatt
gtggctactactgcggcactacagccacacttgcccccaccagatgcttttgttcccttc
tgcctgactctcaataagggtttggaatttgacctgaatactttcagtaccaaaatcacg
actctcggctatgaaagagttccgcttgtagaaacagaaggacagtggagtcggcgtggt
gatattgttgacatctttcctgtggcgtctgagttacctgtgaggctggaatggtttggt
gatgaaattgagcaaatcagagaatttgatccagcaactcagcgttctgctcttgacaaa
attaaccagattattctcacacctactagctttactcccatcattctagaagcactcaaa
aacagtgctgagtttcaaacatttactactgaattagattcagactcagcactcttagaa
ggtagccggcgctttctggggttagcttttgagcagccagcatctgttctcgactatttg
ggtgaaaacaccttaattgcgattgatgaaccagaacaatgttacgctcacagcgatcgc
tgggtagaaaatgctgaagaacagtggtcagttacttgtaccgagcggagtcgaggtatc
agtgaattaccgaaaattcatcggtcttttgatgagtctttagcagcagcggcgcaattc
caaaaattatatttatcggaactggcggaagaaaacagcgggattaatctggctagtaga
ccagtgcccattacaccacaccagtttgctaaacttgcggatacattgcgccaagaacgc
gatcgcaatttctcgacttggctaatttctgctcaaccttcccgttctgtatctctactc
caagaacacgattgtcctgcccagtttatccccaatccccgcgattacctagcgattgaa
aagctgcaaatcaatcacatccccatcgccctgaaatattctgggttggctgaattagaa
ggctttattttacctacctatcgaattgtagtcgtcactgaccgcgagttttatggtcag
cactccctcgctactcccagctatatccgcaagcgccgccaagctacttctaagcaagtt
gaccccaataaattacgccaaggtgattatgtagttcaccgtagccacgggattggtaaa
tttgtcaagctagaaagcctgacaattaatgacgaaacccgtgattatttggtagtgcag
tatgctgacggcttattgagagtcgccgccgatcaagtaggttccttgtcccgattccgc
gccacaggggataaagcgccagaactgcacaaaatgacgggcaaagcttgggaaaatacc
aagaataaagtccgcaaagccatcaaaaaactggctttcgacttgctgaaattatatgca
gcgcgatcgcaacaacaaggctttacctacccccaagatatgccttggcaagaggaaatg
gaagattctttcccctaccaacccacaacagaccagctcaaagccgtccaagatgtgaaa
cgcgacatggaaagcgatcgcccaatggatcgcttagtttgtggtgatgtcggtttcggc
aaaacagaagtagcaattcgcgccattttcaaagctgtgaccgctggtaaacaagtcgcc
ttactcgcccctaccaccatcctcacccagcaacattaccacaccctcaaagaacgcttt
gccccttacccagtgaatgtgggattactcaaccgcttccgcaccgctgaagaacgacgc
gacattcaaaagcgcctagccacaggtgaactcgatgtagttgttggtacacaccaactt
ttaggcaaaggtgtcacattccgcgatttaggactgttggtagtcgatgaagaacagcgg
tttggggtaaaccaaaaagagaaaattaaaagcctgaaaactcagctagacgtgcttacc
ctctcagccacacccatcccccgcaccttgtatatgtctttgtcggggattcgggaaatg
agtttgattaccacaccacccccatcccggcgaccgattaaaacccatttagcacagatg
aacccggaaagtatccggactgctattcgtcaagaattagacagaggtgggcaagtcttt
tacgtagttccacgggttgagggaattgaagagacaacaacgaaattgcgagaaaccatc
ccctcagctagattcgcggttgctcatggtcaaatggatgaagggcaattagaatcaacc
atgctcaccttcaacaatggtgacgcagatatcctagtttgcacgacgattattgaatcg
ggtttagacattccgcgtgtcaacaccatcttaattgaagatgctcaccgctttggctta
tcacagttgtatcagttacgcggtcgtgtaggacgtgcaggcatacaagcccatgcttgg
ttattttacccccaacagcgggcgttatcggatgctgcccggcagagattacgagcaatt
caggaattcactcaattgggttctggatatcagttagcgatgcgcgacatggaaatcagg
ggtgtgggtaacttgttgggtgccgaacaatctggtcaaatggaagcgatcggctttgat
ttgtatatggaaatgttagaagagtcgattcgagaaattagaggacaggaaattccccaa
gtcagcgatactcaaattgacctcaacctcacagcctttatccctgcagattatattctc
gatttggatcaaaagatgagtgcttaccgtgcagtagctgcggctaagtctaaagaagaa
ttaacgcagattggtgttgattggagcgatcgctatggtgctattcctgtccctgctagt
caattattgcgtgtcatggaactcaaacaactagcgaaaaagttaggatttagccgcatt
aaacccgaaaacaaacagcacatcatcttagaaacgccgatggaagaacccgcctggaat
ttgttagcagcgaatttaccagaaaatctgcggtcacgttttgtttattcgccagggaaa
gtgacagtgcggggtttagcggtgatgaaggcagataaacagttacagagtttaatagat
gccttcggtaaaatgcaaggagcgcttccggaagctgtcgttgtttga
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integrated database retrieval system
