Calothrix sp. NIES-3974: NIES3974_16790
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Entry
NIES3974_16790 CDS
T09641
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cals
Calothrix sp. NIES-3974
Pathway
cals03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cals00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES3974_16790 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cals03021
]
NIES3974_16790 (rpoC1)
03400 DNA repair and recombination proteins [BR:
cals03400
]
NIES3974_16790 (rpoC1)
Enzymes [BR:
cals01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES3974_16790 (rpoC1)
Transcription machinery [BR:
cals03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES3974_16790 (rpoC1)
DNA repair and recombination proteins [BR:
cals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES3974_16790 (rpoC1)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAZ05033
UniProt:
A0A1Z4NH42
LinkDB
All DBs
Position
2108777..2110654
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AA seq
625 aa
AA seq
DB search
MRTVQNNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLTEDQWLEIEDQIYSEDSQ
LVGVEVGIGAEALLRLLADINLEQEAENLREEITLAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMTYIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLSIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRADPQVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNVLSPATGRPVITPSQDMVLGAYYLTAENPKATKGAGKYFASLDD
AIMAFELGQVDLHAYVYVRFDGEVESPEADKQPLEEIKNEDGTITRIYKYRRVREDRDGN
ILSQYIYTTPGRVIYNKAIQDALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagaacagttcaaaataatcaatttgactacgtaaaaattggcttggcttcacccgaa
cgaattcgtcaatggggtgaaaggactttacctaatggtcaggtggtcggcgaagtcaca
aaaccagaaacaatcaactaccggactttaaaaccggaaatggacggattgttctgtgaa
cgtatatttggtccagccaaagattgggaatgccactgtggtaaatataaacgtgtgcgc
catcgggggatagtctgcgaacgttgtggagtggaagttactgagtcccgcgttcgtcgt
catcggatggggtatatcaaacttgcggctccagttgctcacgtttggtatcttaaaggt
atccccagttatatttcgattttgctcgatatgcccctgcgtgatgttgagcaaatagtg
tattttaactcctatgttgtcctcagccctgggaatgcggaaaccttaacctacaagcaa
ttgttaaccgaagaccagtggctagaaattgaagaccaaatctacagtgaagattcccag
ctagttggtgtggaagtgggaattggcgctgaggcattattgcgcttactcgctgatatt
aatttagaacaggaagcggaaaacttacgggaagaaattaccctggcaaaaggacaaaaa
cgggcaaaattaattaaacgtttgcgggtgattgataactttattgccacgggttctaaa
ccggaatggatggtgatgacctatatccccgtgattccccccgatttacgaccgatggta
caactagatggtggtcgatttgccaccagtgacctgaatgatttgtaccgtcgggtaatt
aaccggaataatcgcttggccagattacaggaaattttggcaccggaaatcattgtccgc
aatgaaaaacggatgttacaagaagccgtggatgccttaattgataatggccgacgggga
cggacggtggtaggtgcaaataaccgacccttgaaatccctatctgacattattgagggt
aaacagggacgcttccgccaaaaccttctgggtaaacgggttgactattcgggacgttcg
gtaattgtagtgggaccgaaattaagtatccaccagtgtggtttacccagggaaatggcc
attgagttgttccaacccttcgtgattaatcggttaattcgcagtggcatggtgaataat
attaaggctgcgaaaaaattgatttcccgtgctgatccccaggtatgggatgtgttagag
gaggtaatcgaaggacacccagtcatgctcaaccgtgcgccgaccctacaccgtctgggg
attcaggcatttgagccgattttggtagaaggaagggcaattcaactacatcctttggtt
tgtccggcatttaacgccgactttgacggagaccaaatggcggtgcatgtgcccttatcc
ctggaatcacaggcagaagcacggttattaatgttggcttctaataacgtattgtctccg
gcaactggtagacccgtaattacacctagccaagacatggttttaggtgcttattatcta
actgcggaaaatcccaaagccaccaagggagcaggtaagtattttgcttctttagatgat
gcgattatggcctttgaattggggcaagtggatttacatgcctatgtttacgttcgtttt
gatggggaagtggaatcaccagaagcagataagcaacccctagaagaaattaaaaacgaa
gacggcacgattactcggatttataagtacagacgtgttcgtgaagatagggatgggaat
attttgtctcagtatatttacacgacaccgggacgtgtgatttataacaaagcgattcag
gatgcattggcaagttag
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