Cicer arietinum (chickpea): 101510269
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Entry
101510269 CDS
T02819
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03008
Ribosome biogenesis in eukaryotes
cam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101510269
09123 Folding, sorting and degradation
03018 RNA degradation
101510269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cam03021
]
101510269
03019 Messenger RNA biogenesis [BR:
cam03019
]
101510269
03009 Ribosome biogenesis [BR:
cam03009
]
101510269
03016 Transfer RNA biogenesis [BR:
cam03016
]
101510269
Transcription machinery [BR:
cam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101510269
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101510269
Ribosome biogenesis [BR:
cam03009
]
Eukaryotic type
Pre-60S particles
RNases
101510269
Transfer RNA biogenesis [BR:
cam03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101510269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
101510269
NCBI-ProteinID:
XP_004499238
UniProt:
A0A1S2Y6C2
LinkDB
All DBs
Position
Ca4:48462509..48473531
Genome browser
AA seq
1091 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVSIPIDTSKENPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFEEVFQLMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDATDAAAEESRLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHL
RLNNDPGWTNIKVILSDANVPGEGEHKIMSYIRLQRNLEGCDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQDKCFVCGQMGHMAADCQGKARKKAGEFDEKGNAVVPKKPF
QFLNIWTLREYLEYEMRIPNPPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKEFSEMGGYLTNGSKPNLSRVEHFIQAVGSYEDRIFQKRGRLHQRQVERIKRQ
KAQVRGDDAAPQVQPESVVAVSRFHGSRLASAPAPSPFQHSGHHDSHMSPSARKGDKEVL
ERPSKVSRLSSGTSVAAAIVEAENSLEIDVEDNKDELKTKLKSILRDKSDVFNSKVSHVD
KIKLGEPGWKERYYEEKFSAHTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYP
YHYAPFASDLKDLGELNINFQLGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPDSPII
DFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLEEVRKIENLLTPEEKRRNAIMFELLFV
NSCHPLSACISTLDNKCRNMSNIERADVKEKIDPIERDTCSGGMNGYISLCGGEPCPPIF
RSPVAGMDDIMDNHVICAIYRLPDVHEHITRPPHGVIFPTKIVTIGDLKPEPAPWHEDPG
RRFGESGRKNPPGSISGRELGAAAHRLVVNSLPGRPDRYRLINGMPNDAPMVHRQPRPHN
NYEPPHNNYEPPHNNYEPAHNNYEPHPGYNYESHPGYAAMPPLPLSAPQPFVPYASVSTA
HYGYNQPYSRPIVPSPYHHHQSNSFAGNDYQHPRSHQYERNTHVNGGNARHSSGNHQNPQ
FTNAQGSFPSHSHHHDAGRHSQNFQPHRASDQHWTPRGNPNGHREYTQHSANNYSVLDRR
SSRKPMPPPNR
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttctatagatggcttgcggagaaatatcctatggtgattgtcgac
gccgtcgaagaggaaccggttgtaatcgaaggtgtttcaatccctattgataccagtaaa
gaaaaccctaacaacatcgaatatgataatctttatcttgatatgaatggaatcattcat
ccttgcttccatccagaagataggccctcaccgacgtcttttgaggaggtgtttcagttg
atgtttgattatattgataggctgtttaacatggtgcggccacggaagctgctctttatg
gctattgacggtgttgcaccgagggctaaaatgaatcaacagcggtctaggcggtttagg
gcggctaaagatgcaactgatgcggctgctgaagaatcaaggttaagggaggaatttgag
agagagggaagaaagcttcctcctaaagaagagtcacaaactttcgattcaaatgtaatc
acacctggaactgaattcatggctgttttgtctattgcacttcagtactatattcatctt
aggttgaataatgatcccggttggacaaatatcaaggttattctttctgatgcaaatgtt
cctggtgaaggggagcataagattatgtcctatattcgccttcaaagaaatcttgaggga
tgtgatccgaatacacgacattgcctgtatggtttggatgctgatttgattatgttgggt
cttgctactcatgaagttcatttttcaattcttagagaggttgtatttactcctggacaa
gataaatgcttcgtgtgcggtcagatgggtcatatggctgcagactgtcaaggaaaggca
agaaagaaagcaggagaatttgatgaaaaaggcaatgctgttgttcctaaaaagccgttc
cagtttctgaacatctggactctgagggaatatctggagtacgagatgagaatacctaat
cctccatttgagattgattttgaatgcatattggatgattttatcttcatatgctttttt
gttggcaatgattttttaccacatatgcctacacttgagattcgcgagggtgcaattaac
ttgctgatggcagtatacaagaaggaatttagcgaaatgggtggttatttgacaaatggt
agtaagccaaatttgagcagggtggagcattttattcaggctgttggatcatatgaagat
agaatattccagaaaagaggtcgattgcatcagcgacaagtggaaagaatcaagcgtcag
aaggcacaagtaagaggagatgatgctgcgcctcaagttcaacctgaatctgtagttgca
gtctcaagattccacggttctcgtcttgcttcagctccagcaccttcaccatttcaacat
tctgggcatcatgattcacatatgtccccatcagctagaaaaggcgataaagaagttctt
gagaggcccagtaaagtttctaggttatcttcaggaacatctgttgctgctgctattgtt
gaagctgagaatagtcttgaaatagatgttgaagataacaaagacgaattgaaaacaaaa
ctgaaaagtatacttcgtgataaatctgatgtattcaactcaaaagtttcccacgtggac
aagattaaattgggagaaccaggctggaaagagaggtattatgaagaaaaattttctgct
cacactcccgaggaacttgatgctatacggaaagatgttgtcttgaaatacactgaaggt
ctatgttgggtgatgcattattattatgaaggtgtttgttcttggcaatggttttatcct
tatcattatgccccctttgcgtcagatcttaaggaccttggtgagcttaatattaacttt
cagttgggtactccattcaaaccatttgaccagcttcttggagtttttccggctgcaagc
tctcatgctctgcctgagccatataggaaacttatgactgatccagactcacccattatt
gatttttatccaatcgattttgaagtggacatgaatggcaaacgctttgcttggcagggt
atagcaaagttgccgtttattgatgaagtccgtcttcttgaggaagttcggaaaatagag
aacttgttaacaccagaggaaaaacgacgaaatgcaataatgttcgaattactttttgtg
aattcatgtcatcctctctctgcgtgcattagtacactcgacaacaaatgtagaaacatg
tctaacattgaacgtgctgatgtcaaggaaaaaatcgatcccatagaaagggatacatgc
agtggtggaatgaatggttacatatccttatgtggtggagaaccttgccctcccatcttc
aggtcccctgtagcaggcatggatgacatcatggataatcatgtcatatgtgcaatatat
agacttccagatgtgcatgagcatattacccgaccgccacatggagttatatttccaaca
aagattgtgacgattggggatctaaaacctgaacctgctccatggcatgaagatcctggt
aggagatttggggaaagtggaaggaaaaaccctccaggatctatttccggccgggagctt
ggagcggcagcacacaggcttgttgtgaattctttaccgggcaggccagataggtaccgt
ctcatcaatggaatgcctaatgatgcaccaatggttcataggcaaccacgccctcacaat
aactatgaacctcctcacaataactatgaacctcctcacaataactatgaacctgctcac
aataactatgaaccacaccctggctataattatgaatcacacccaggatatgcggcaatg
ccacccctgcctttatcagctcctcagccgtttgtaccttacgcttctgtctctactgca
cattacggttataaccaaccatactcacggccgatagtgcccagtccttatcatcatcat
caatcaaattcctttgcgggaaatgactatcaacatcctagatcacatcaatatgaaaga
aatacccatgttaatggcggcaatgcaaggcattcgtcaggaaaccatcaaaatcctcag
tttacaaatgcacaaggttcatttcccagtcacagtcaccatcacgatgctggtcgccat
agccaaaacttccaaccgcatagagcttctgaccagcattggactccacggggtaaccct
aatgggcacagggaatatactcaacattcggctaataattattctgtattagatagaaga
tcaagtaggaagccaatgccaccacctaatcgctaa
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