Corynebacterium ammoniagenes: CAMM_09065
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Entry
CAMM_09065 CDS
T05164
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
camg
Corynebacterium ammoniagenes
Pathway
camg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
camg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAMM_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camg03400
]
CAMM_09065
Enzymes [BR:
camg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAMM_09065
DNA repair and recombination proteins [BR:
camg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAMM_09065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
LysR_substrate
DUF3638
Motif
Other DBs
NCBI-ProteinID:
APT83062
LinkDB
All DBs
Position
complement(1969628..1973299)
Genome browser
AA seq
1223 aa
AA seq
DB search
MLAGLLKVAASDPKLKGLVNNVGEPQLHITGIDQARPWAIGTLAHHAPVLVVTATGREAE
DLTAELTAMMGQRVGFFPAWETLPHERLSPGADIVGKRAQILHQLEQGRLDVVVTAARGY
AQPLLESVVGRAPISLREEGEYELEEVVRDLEFRAYTRVDMVAKRGEFAVRGGIIDIFPT
TLDYPVRVEFWGDEVTDIRQFSIADQRTIPEIEVGSVEIFPARELPITEAIAQRAETLAV
KHPGNAALVELLSKVSQRMASEGMEALLPVLSDAKMVPLTDFMPEGTHVVLVAPEKIRTR
IADLESTDAEFMAAGWEAAAMGADGPLATKGLDTEASSYRSYESLEKSCEKAGLPQWTFA
PTGMFMADEADTLPLDFEPGPTPRGDIKEIDAMMAQLLAHTQAGGRAAFIAPAQGAIKRM
VDRFAEKGIPTKVATPGWQPSPGEVTLYQALSHAGLVFPQVRKHTDADALPLVVVTETDL
TGNRVGDIAGAKRRPAKRRNRVDPLALKQGDFVVHETHGIGKFLKMAERTIQTGEESSRR
EYIVLEYAPSKRGQPADQLWVPMDSLDMLSKYTGGESPHLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQAAPGHQFPPDTPWQMEMEDNFPYVETEDQMMAIDAVKEDMESQVPM
DRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYDTFVERMGGFPLEIRV
LSRFTSTKESKEIIKQLATGEIDVVIGTHRLLQTGVHWKSLGLIIVDEEQRFGVEHKEHI
KALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAI
RRELLRDGQTFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMNEELLEKTVQGFWDREY
DVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL
TETSYDRLATIAQNNDLGAGMDVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVSEA
VDAFKALARGEVPKATDNGPKEIRIDLPVDAHIPETYINSERLRLEVYRKLAASQDEKDL
RLAVEEMEDRYGPVPEEVARLLAVSRLRHQARAAGVTDITVQGTRIKVHPVDLPDSKQVR
LKRLFPGSNYRAAAKAIQLPFPKAGRNVTSPKLRDVELLQWMADFLSEMFDLSQVDVTGA
KPPTSVTTKPGAKGGKNIISVSN
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccggactgctcaaggtagccgcctcggatcccaagctcaaaggcctcgttaat
aacgttggcgagccgcagctgcacatcacgggcatcgatcaagcccgcccctgggcaatc
ggtaccctcgcgcaccatgcgccggtactcgtggtgaccgcaactgggcgcgaagcagaa
gatctcactgcagagctcacggcgatgatggggcagagggtgggattcttccccgcatgg
gagacactaccgcatgagcgattgagcccgggcgccgatatcgtcggcaagcgcgcgcaa
atcttgcaccagctcgaacaaggccgccttgatgtggtggtgaccgcggcgcgcggttat
gcgcagccgctgctggaaagcgttgttggccgcgcgcccattagcctgcgcgaggagggc
gaatatgagctggaagaagtcgtccgggatttagaattccgcgcctatacgcgtgtggac
atggtggccaagcgcggcgagtttgccgtgcgcggtggcatcatcgatattttcccaacc
accctggactacccggtccgcgtggaattctggggcgatgaagtcaccgatattcgccaa
ttttccatcgctgaccagcgcaccattccggaaatcgaggtcggctcggtggaaatcttc
cccgctcgcgagcttccgattaccgaagccatcgcccagcgcgcagagaccctcgcggtc
aagcaccccggcaatgccgcactggtggaattgctgagcaaggtcagccagcgcatggca
tcggaaggcatggaagcactcttgcccgtgctctctgatgcgaaaatggtgccgctgacg
gactttatgcccgaaggtacccacgtcgtgctcgttgcgccggagaaaatccgcacgcgc
attgccgatctggaatccacggatgcagaattcatggccgccggctgggaggccgcagcc
atgggcgctgatggcccgttggcgaccaagggcctggacacggaagcatccagctaccgc
tcctatgaatctttagaaaagtcctgcgaaaaggccggcctgccgcaatggaccttcgcg
ccgacgggcatgttcatggccgatgaagcagataccctgccgctcgattttgaaccgggc
ccgaccccgcgcggtgatatcaaagaaattgatgccatgatggcgcagctgctcgcgcac
acccaagcgggcggacgcgcagcgtttatcgcgccggcccaaggtgccatcaagcgcatg
gtggatcgctttgctgaaaagggaatccccaccaaggtcgctactccgggatggcaacca
tcgccaggcgaagtcacgctgtatcaggcactaagccacgccggcttggtctttccccag
gtgcgcaagcacaccgacgccgatgcactgcccctggtcgtggtcacagaaactgacctg
accggtaaccgcgtgggcgatatcgcaggcgcaaagcggcgtcccgccaagcgccgcaac
cgcgttgatccgctggcgctaaagcagggcgatttcgtcgttcacgaaacccacggcatc
ggcaaattcttgaagatggccgagcgcaccattcaaactggcgaggaatcatcgcgccgc
gaatatatcgtgctcgaatacgctccctcgaagcgtgggcaacccgccgaccagctctgg
gtgcccatggactctttggacatgctgtccaaatacaccggcggtgaatccccgcacctg
tccaaaatgggtggctccgactggaaaaataccaagaagaaggcccgcgctgccgtgcgc
gaaatcgccggcgagttggtggagctctacgccaagcgccaggcagcgcccgggcaccaa
ttcccgccagatacgccgtggcagatggagatggaagacaacttcccctacgtcgaaaca
gaagaccagatgatggctatcgacgcggttaaagaagacatggaatcccaagtgcccatg
gaccgcgtcatcgtgggcgatgtgggctacggcaaaaccgaagtcgccgtgcgcgccgct
ttcaaggcagtgcaggatggcaagcaggtcgcagtcttggttccgaccacgctgctcgcg
cagcagcactatgacactttcgtggagcgcatgggcggattccccctggaaattcgcgtg
ctctcgcgctttacatccaccaaggagtccaaggagatcatcaagcagctggccaccggt
gaaatcgacgtggtcatcggcacgcaccgcctgctgcaaaccggcgtgcactggaagagc
ttggggctcatcatcgtcgatgaggagcagcgcttcggcgtggagcacaaggaacatatt
aaggcgctgaaggcttcggtggatgtgttgaccatgtccgcgacgcctattccgcgcacg
ctggagatgtcgatggcgggcattcgcgaaatgtccaccatcctcaccccgccggaagac
cgccacccggtgctgacttatgtcggcgcctacgaagacaagcaggtcgccgccgcaatt
cgccgcgagctgctgcgcgatggccaaaccttctttatccacaacaaggtcgcggacatc
gaaaagaaggcccgtgaaatccgcgacctcgttcccgaagcgcgcgtggtggttgcgcac
gggcagatgaatgaggagctgctggaaaagaccgtgcagggattctgggaccgcgaatat
gacgtgttggtctgtaccaccatcgtggaaactggcctggatatctccaatgccaacacc
ctgatcgtggaaaacgcgcaccacatgggattgagccagctgcaccagctgcgcggcagg
gtcggccgctcacgcgagcgcggctacgcttacttcctgtacccgaagggcgcgacgctg
accgaaaccagctatgaccgcctggccaccatcgcccaaaacaatgacttgggcgcgggc
atggacgtggcgatgaaggacctggaaatgcgcggtgccggtaacgtgctgggcgcgcag
caatctggccacatcgccggggtgggctttgacctttatgtccggctggtctcggaagct
gtggatgccttcaaggcactcgcgcgcggggaggtgcccaaggccaccgataatgggccg
aaggaaatccgcatcgacctgcccgtggatgcccacatcccggagacctacatcaactct
gagcgcctgcgcttggaggtctaccgcaagctcgctgccagccaggacgaaaaggacctg
cgcctggcggtggaggagatggaagaccgctacggcccagtcccggaagaggtcgcacgc
ttgctcgccgtctcacggctgcgccatcaggcccgtgccgcaggcgttacggatatcacg
gtgcagggaacccgcatcaaggtccacccggtggatctgccagattccaagcaagttcgc
ctcaagcgcctgttcccaggttcgaattaccgcgcggccgcgaaggccatccaattgcca
ttcccgaaggctggccgcaacgtgacctcgccgaagctgcgggatgtcgaactattgcag
tggatggcagatttcctcagcgaaatgttcgatctctcgcaggtggatgtcaccggagct
aagccaccgacatcggtgaccaccaagcccggggccaagggcggaaagaatattatttcc
gtcagcaactag
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