Cyanobacterium aponinum: Cyan10605_0370
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Entry
Cyan10605_0370 CDS
T02376
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
can
Cyanobacterium aponinum
Pathway
can03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
can00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cyan10605_0370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
can03400
]
Cyan10605_0370
Enzymes [BR:
can01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyan10605_0370
DNA repair and recombination proteins [BR:
can03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cyan10605_0370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFZ52515
UniProt:
K9Z1Q9
LinkDB
All DBs
Position
complement(471860..475453)
Genome browser
AA seq
1197 aa
AA seq
DB search
MLNSVIRAIASSPLTQELSQKLSQNKRLNLQGASRLPKGLVTSALAQQENDNLLVVCSTL
EEAARWMANIELMGWKQTFFYPTSEASPYEAFDPESEMVWGQLQTLSSLINQDTTQKIAI
VTTEKALQPHLPPVKVLKEYCLYLFKGMTLDSQEIELTLTKMGYERVNLVEVEGQWSKRG
DLIDIFPVSAELPVRLEFFGDELEKIREFDPVSQRSLDAIESLSLTPTTWQSLISHNLPS
IEIIKPYLSTSEQENLENNIYPEGMTRFLGFAFGDQVCSLLDYLPPNTIVAIDEVEQCQA
HSHIWFEQAEEKYQLITELKNTNVGQASVGQASVGQASVGQASVGQASSLSPTYENQKEI
KIHREFRECLESINYPQIFLSEIYTDTDKDNKNSLNLSSRPLPISPHQFAKLAEILRGKK
EIYNTINLSQYNSWLVSAQPSRTVALLQEHDFPAQFIPNPLDFGMIEKLQRQGISTALKY
SGQAELEGFILPTFRVAVVTDREFFGQHNLATPTYIRKRRKAASKQVDLDKLRPKDFIVH
KYHGIGQFLELEVYEGREYLVIKYADGLLRVPADSLELVSRYRHTETKPPKLNKMSGKEW
QNVKNKVKKSIKKLAVDLVKLYATRNELKGYAYPPDSPWQTELEDSFPYQATPDQLKAII
DVKRDLESDRPMDRLVCGDVGFGKTEVAIRSIFKVVTSGNKQVVFLAPTTILSQQHYHTL
VERFAPYPINIGLLNRFRTASERKEIIQKLATGELDVVVGTQLLLSNKIKYKDLGLLVVD
EEQRFGVNQKEKIKALKTSIDVLTLSATPIPRTLYMSISGVREMSLITTPPPSRRPIKTH
IMPFNQEVIRTAIRNELDRGGQIFYVVPRIEGMEKIITMLEQMIPSLRIAIAHGQLDEGQ
LESTMLGFSNGEADLLLCTTIVESGLDIPRVNTIIVESAHKFGLSQLYQLRGRVGRSGIQ
AHAWLLYPNDEILSDVAKKRLRALQEFSQLGSGYHLAMRDMEIRGVGNLLGAEQSGQMEA
IGFEMYTEMLKEAINEIQGQEIPQVEDTQIDLKLTALIPNRYIADMEQKMDAYRAVATVT
SQREIKQIESDWQDRYGEIPESARELLLVAELKLKAKSIGFSRIKPEGKQNIIIETPMQE
PAWLLLAEKLPPHLRNRFVYGKNKVIVRGLGTMKPSQQLENLNNWFTYLVSENSNLV
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattctgtaattcgtgcgatcgcatcttctcccttaacccaagaacttagccag
aaattaagccaaaataaaaggttaaacttacaaggtgcatccagattgccgaaaggttta
gtaacctctgcccttgcccaacaagaaaatgataacttgcttgtagtttgctcaaccctt
gaagaagcggctcgttggatggcaaatatcgagctgatgggctggaaacaaacttttttc
tatcctacctcagaagcaagtccttacgaggcttttgatccagaatcagagatggtttgg
ggacagttgcagaccctttctagtttgatcaatcaagatactacacaaaaaatagctatc
gtcaccacagaaaaagccttacaaccccatttacctcccgttaaagttttaaaagaatat
tgtctctatctgtttaagggcatgactttagacagtcaggagattgaattaaccttaacc
aaaatgggttatgagcgagttaatttagtggaagttgaggggcagtggagtaaaaggggg
gatttaatcgatattttccctgtatccgccgagttaccagttagattagagttttttggt
gatgaattagagaaaattagggaatttgatcctgtttctcaaagaagtttagatgcgatc
gagtctttgagcctgaccccgactacatggcagagcttaattagtcataacttacccagc
atagaaattattaaaccatatttaagcacttctgagcaagagaatttagaaaataatatt
tatcctgaagggatgactcgttttctcggctttgcatttggcgatcaagtctgttcttta
ttggactatttgccccccaataccatagttgcgatcgatgaagtggaacagtgtcaagcc
catagccatatttggtttgaacaagcagaagaaaaatatcagctaataacagaattaaaa
aacactaatgtgggacaggcttctgtaggacaggcttctgtaggacaggcttctgtagga
caggcttctgtaggacaggcttctagcctgtcaccaacttatgaaaatcaaaaagaaatc
aaaattcatagagaatttagggaatgtttagaaagcattaattaccctcaaatttttctc
tcagaaatctatacagacaccgataaagataataaaaatagtttaaatttatccagtcgc
cctctacctatttctcctcatcaatttgctaaattagcagaaattttaaggggtaaaaaa
gagatttataacaccattaatttaagtcaatataatagttggttggtttctgctcaacct
tctcgcacagtggctttactgcaagaacatgactttcctgctcaatttattcctaatccc
cttgattttgggatgattgaaaaactgcaaagacagggtatttctaccgctttaaaatat
tcagggcaagcagaattagaaggctttattttacccacttttcgtgtagcagttgttacc
gatagagaattttttggacaacataatttagccactcctacttatatcagaaaacgtaga
aaagccgcttcaaagcaggttgatttagataaattaagaccaaaagattttattgtccat
aaatatcatggtattgggcaatttttagagttagaagtttatgaagggagggaatattta
gtaattaaatatgctgatggattactcagagttcctgccgatagtttagaattagtaagc
cgttatcgacacacggaaactaagccaccaaagttaaataaaatgtcaggtaaagagtgg
caaaatgttaaaaataaggtcaaaaaatccattaagaaattagccgttgatttagtaaaa
ttatatgccactagaaacgagttaaaaggttatgcttatccccctgattctccttggcaa
actgagttggaagattcttttccttatcaagccaccccagatcaattaaaggcaattatt
gacgttaaaagagacttagaaagcgatcgccccatggatagattagtctgtggtgacgtg
ggtttcgggaaaacggaagtagccattcggagtatttttaaagtagtaacgtcaggaaat
aaacaagtggtttttctcgcacctactactattttatcccaacaacattatcatacttta
gtggaaagatttgccccttatcctatcaatattggcttattaaatcgcttccgcacagcg
tcagaaagaaaagaaattatccaaaaattagccacaggagaattagatgttgttgtcggt
acacagttgttattaagcaataaaattaaatacaaagatttaggcttattagtagtagat
gaagagcaaagatttggagttaatcaaaaagaaaaaattaaagcattaaaaacttctatt
gatgttttaaccctcagtgccactcctatccctcgcactttgtatatgtctatctctgga
gtgcgggaaatgagccttattaccactcctcctccaagtcgtcgcccgataaaaacccat
atcatgccctttaatcaagaggtgattcgcactgccattcgtaatgaattagatagggga
ggacaaattttctatgttgtgcctcgcattgagggtatggaaaaaattattaccatgcta
gaacaaatgatacctagtttaagaattgcgatcgcccatgggcagttagatgaagggcaa
ttagaatcaactatgttaggctttagtaacggagaggcagatttactactttgtacaact
attgtggagtctggcttagatattccaagagtaaacacaattatcgtcgaatctgcccat
aaattcggattatctcaattatatcagctacggggacgagtggggcgatcgggcattcaa
gcccacgcatggttactctatcccaatgatgaaattttgtcagatgttgccaaaaaaaga
ttaagggctttacaagagttttcgcaactcggttcagggtatcatttagctatgcgtgac
atggaaataaggggggttggtaatttacttggtgctgaacaatctgggcaaatggaggct
attggatttgaaatgtacacagaaatgttaaaagaagccattaacgaaattcaggggcag
gaaatcccccaagtagaagacactcaaatcgacttgaaacttactgctttaattcctaac
cgctatattgcggatatggaacaaaaaatggatgcttaccgtgctgtagctaccgttaca
tctcagagagaaataaaacaaatcgaaagtgattggcaagatagatatggagaaataccc
gaatcagcaagggaattattattagtagcggagttgaaattgaaagcaaaatccatcggt
ttttcccgtattaaacccgaaggaaaacaaaacattattattgaaacaccaatgcaagaa
cccgcatggctactattagcagaaaaattacctccccatttacgcaaccgctttgtgtat
ggaaaaaataaggtcattgtgagaggtttaggtacaatgaagccgagtcaacaattagaa
aacctcaataactggtttacctatcttgtcagtgaaaatagtaacttggtttag
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