Colobus angolensis palliatus (Angola colobus): 105500356
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Entry
105500356 CDS
T08744
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cang
Colobus angolensis palliatus (Angola colobus)
Pathway
cang03013
Nucleocytoplasmic transport
cang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105500356 (UPF1)
03015 mRNA surveillance pathway
105500356 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cang03019
]
105500356 (UPF1)
Enzymes [BR:
cang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105500356 (UPF1)
5.6.2.5 RNA 5'-3' helicase
105500356 (UPF1)
Messenger RNA biogenesis [BR:
cang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105500356 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105500356 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105500356
NCBI-ProteinID:
XP_011781215
Ensembl:
ENSCANG00000029819
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MDRERHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLC
RQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELW
KENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNI
TVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGD
EIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHE
VEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL
ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMD
SMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ
FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV
VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFY
VTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQF
SGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYG
VIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARF
MTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVM
PPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPF
SQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQH
GGVTGLSQY
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtgaacgccatattgtaaatcaccttgtgagggcaaaatgcaaagaggtgacc
ctgcacaaggacgggcccctgggggagacagtcctggagtgctacaattgcggctgtcgc
aatgtcttcctcctcggcttcatcccagccaaagctgactcagtggtggtgctgctgtgc
aggcagccctgtgccagccagagcagcctcaaggacatcaactgggacagctcgcagtgg
cagccactgatccaggaccgttgcttcctgtcctggctggtcaagatcccctccgagcag
gagcagctgcgggcgcgccagatcacggcacagcagatcaacaagctggaggagctatgg
aaggaaaacccttctgccacgctggaggacctggagaagccgggggtggacgaggaaccg
cagcacgtcctcctgcggtatgaggacgcctaccagtaccagaacatattcgggcccctg
gtcaagctggaggccgactacgacaagaagctgaaggagtcccagactcaagataacatc
acggtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttgcccaag
actgactctgacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagatcgccattgagctgcggagcagtgtgggtgcacccgtggaggtgactcacaacttc
caggtggattttgtgtggaagtcgacctcctttgacaggatgcagagtgcgttgaaaacg
tttgccgtggacgagacctcagtgtctggctacatctaccacaagctgctgggccacgag
gtggaggacgtaatcatcaagtgccagctgcccaagcgcttcacggcgcagggcctcccc
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcaaagaccgctgagcctg
atccagggcccgccaggcacggggaagacagtgacgtcggccaccatcgtctaccacttg
gcccggcaaggcaacgggccggtgctggtgtgtgctccgagcaacatcgctgtggaccag
ctaacagagaagatccaccagacggggctgaaggtcgtgcgcctctgcgccaagagccgc
gaggccatcgactccccggtgtctttcctggccctgcacaaccagatcagaaacatggac
agcatgcctgagctgcagaagctgcagcagctgaaagatgagactggggagctgtcgtct
gctgacgagaagcggtaccgggccttgaagcgtaccgcggagagagagctgctgatgaac
gcagatgtcatctgctgcacgtgtgtgggcgccggcgacccaagactggccaagatgcag
ttccgctccattttaatcgacgaaagcacccaggccaccgagccagagtgcatggttccc
gtggtcctcggggccaagcagctgatccttgtaggtgaccactgccaactgggcccggtg
gtaatgtgcaagaaggcggccaaagccgggctgtcgcagtcgctcttcgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccgtccaacatcttctacgagggctccctccagaatggtgtcactgcagcggat
cgtgtaaagaagggatttgacttccagtggccccaacccgataaaccaatgttcttctac
gtgacccagggccaagaggagatagccagctcgggcacctcctacctgaacaggaccgag
gctgcgaacgtggagaagatcaccacgaagttgctgaaggcgggcgccaaaccggaccag
attggcatcatcacgccctacgagggccagcgctcctacctggttcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttt
cagggacgcgagaaggacttcatcatcctctcctgtgtgcgggccaacgagcaccaaggc
attgggtttttaaatgaccccaggcgtctgaacgtggccctgaccagagcaaggtacggc
gtcatcatcgtgggcaacccgaaggcgctgtcgaagcagccactctggaaccacctgctg
aactactacaaggagcagaaggtgctggtggaggggccgcttaacaacctgcgcgagagc
ctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggagcccgcttc
atgaccacagccatgtatgatgcccgggaggccatcatcccaggctccgtgtatgatcgg
agcagccagggccggccctccagcatgtacttccagacccatgaccagattggcatgatc
agtgccggccccagccatgtggctgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccaccgcctggctattttggacaagccaatgggcctgctgcaggccgaggc
accccaaaaggcaagactggccgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagccaagccagccaggatgtggcgtcacagcccttc
tctcagggcgccctgacgcagggctacatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagttaccttggtgacgagtttaaatca
caaatcgacgtggcgctctcgcaggactccacgtaccagggagagagggcgtaccagcat
ggcggggtgacggggctgtcccagtactaa
DBGET
integrated database retrieval system
