Capsicum annuum (peppers): 107839859
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Entry
107839859 CDS
T04646
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03013
Nucleocytoplasmic transport
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107839859
03015 mRNA surveillance pathway
107839859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107839859
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107839859
mRNA cycle factors
P-body specific factors
107839859
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107839859
NCBI-ProteinID:
XP_016538984
UniProt:
A0A1U8E5A0
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Position
8:complement(158247940..158261008)
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AA seq
485 aa
AA seq
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MKGPLDRSKVVLRHLPPTISESALVEQVDSRFAGRYNWFSFLPAKSSQKHQTYSRAYIDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKNWSKKDGREGTILKDPDYLE
FLEFISKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGVRKSISNG
RPTRRTSGTSSGSPSSSSSKRSSEKRRASTTMYVLRDSSKAGSDKDKTYILAPKRDDQQR
VEKSGISAPGSVANAVEEEAGGAAEVGKKKILLLKGKEKENPNNQRREASGRIIRSILLK
DAHQNQAPSASQQEKHSKDKDQKPPRPPSVQLFQRETNGTNEDKVLGTDLHVAHTEKHEK
RTRIRDRPDRGVWTPLRRSDSLQASNESLSSSASQSSEVPDFVEGSRSETKHGLANARGG
EFRPMGSGRNSHSSFDNGTYKHGGRRGMRDDGISVGEGKPLRKGGPSSYGAHEKQVWVQK
SSSGT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaccgttagatcggtcgaaggtagtgctgcggcacttgccgccgacaatttct
gagtccgcgcttgttgaacaagttgattcccgatttgctggtcgttacaactggttctct
tttctacctgccaagtccagccagaagcatcaaacttattcaagagcctatattgacttt
aagaggccagaagatgttatcgagtttgcagagttctttgatggacacgttttcgtaaat
gagaaaggcactcagttcaaagctattgttgagtatgctccatcacagcgtgttccaaaa
aactggtccaagaaagatggccgcgaagggaccatcttgaaagatcctgattatctggag
ttccttgaatttatctcaaagcctgttgagaatcttccaagtgcagaaatacagttggaa
agaaaggaagctgaacgagctggttctgcaaaggatgctcctatagttactcctttgatg
gattacatacgtcagaaaagggctgccaagagtggagttcggaaatctatatctaatggg
agaccaaccagaagaacgagtggcacatcctcaggaagtcctagctcaagttcatctaaa
cggagctctgaaaaaagaagggcttccactaccatgtatgttctgcgagatagttctaag
gctgggagtgacaaagacaaaacgtatattctagctccaaaacgtgatgatcagcagcgt
gttgagaagtctggtatatctgctcctggatctgtggctaatgcagttgaagaggaagct
ggcggagctgctgaagttgggaagaagaaaatcctgctgttgaagggaaaggaaaaagaa
aatcctaataaccagcgtcgtgaggcaagtggaaggatcattagaagtattctactcaag
gatgcacatcaaaatcaggctccatctgcatcccaacaagaaaaacacagcaaggataag
gaccaaaaacctcctaggccaccaagtgtgcagttgtttcagagagaaactaatggaact
aatgaagataaggttcttggaactgatttgcatgttgctcacactgagaagcatgaaaaa
cgtactaggatcagggataggcctgatcgtggtgtttggactcctcttcgtcgttctgat
agcttacaagctagtaatgaatctttatcttcatctgcctctcaatcttccgaagtgccg
gattttgttgaaggaagtcgaagtgaaaccaaacatggtcttgcaaatgctcgtggtggg
gagttcagacccatgggaagtgggcgtaattctcattcttcttttgacaatggtacttat
aaacatggtggtcgtcgtggtatgagggacgatggaatttcagtaggagaaggaaaaccc
ttaagaaagggaggtccttctagctatggtgcccatgagaaacaagtgtgggtccaaaag
tcaagttctggtacttag
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