Capsicum annuum (peppers): 107850255
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Entry
107850255 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107850255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107850255
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107850255
Spliceosome [BR:
cann03041
]
Complex A
U2 snRNP components
U2 related factors
107850255
Complex B
107850255
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
107850255
NCBI-ProteinID:
XP_016550145
UniProt:
A0A1U8ESM7
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All DBs
Position
12:complement(230249422..230253705)
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AA seq
1204 aa
AA seq
DB search
MEELKHKSSKREDESKKSKREDESKKRHRDKEDRDRDRDRDKRERDHHHRDKKDREREKS
SRYEREREKSVDRDKAKHKDRHKEREKSSSKFRDEDERPKGDKEVEKSSKFREDDERPKE
REKSSKIRDEDEKVRDRVKEREKDKEDREERERERKKEREKEKEDRDERERKKEREKEKE
DREERERERERKREREKEKEDREERERERERRKEKERREREKERIREKDRYKGSDDEVDR
ERKRRKRDSNDEHYKERGDRERSSKTSNRLREGSIDQVSAEKNEKSREEDLAEEQRKLDD
EMEKRRRRVQEWQELKRKKEESEREKLGVDVGGEEPKLGKTWTLDGESDDEDAEGKNGMD
IDMDDNGKVMKDENGAGKMVSSSNGSDSPVIRNGGDGVAADDDEIDPLDAFMNSMVLPEV
EKLSKFMVNSLDAENSSLKEKNGPGKEEKPKMGVKMTMKKTTGRIIPGEDSDSDYGDVEN
DEDTLEEEDDEEFMKRVKKTKVEKLSLVDHSKIDYPSFRKNFYIEVKEISRMSPEEVSAY
RKELELKIHGKDVPKPIRTWHQTGLSSKILDTIRKLNYEKPMSIQAQALPVIMSGRDCIG
IAKTGSGKTLAFVLPMLRHIKDQPPLASGDGPIGLIMAPTRELVQQIHSDIKKFARVMGL
TCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM
FDMGFEPQITRIVQNTQPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNRDIT
QLVEVRPESDRFLRLLELLGEWFEKGKILIFVHTQDKCDSLFRELLKHGYGCLSLHGAKD
QTDRESTISDFKSDVCNLLIATSIAARGLDVKELELVINYDVPNHYEDYVHRVGRTGRAG
RKGCAITFISEDDARYAPDLVKALQLSEQVVPDDLKALADSFNAKVNQGLEQAHGTGYGG
SGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDLSQQAALAQAAALV
AASKASMASAATPVSVGQLLPNGGLPVSLPGVLGINIPGAAAVAAGNGLPVGSNDVAARA
TAIAAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAIT
TRGQYVPPGKVPGFGERKLYLFIEGPTEQSVKRAKAELKRVLEDITMQASSLPGSAQPGR
YSVL
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttgaagcacaaatcgtcgaagagagaagacgaatcgaagaaatcgaagaga
gaagacgagtcgaagaagcgtcaccgggacaaagaggatagagatagagatcgagatcga
gataagcgggagagagatcatcatcatcgagataagaaggatcgggaaagagagaaaagc
agtcggtacgaaagagagagagagaaaagtgttgatagagataaggcgaagcataaggat
aggcataaggagcgtgagaagagcagcagcaaatttcgagatgaagatgaaagacctaag
ggagataaggaggttgagaagagcagcaagtttcgcgaagacgatgaaagacctaaggag
cgtgagaagagcagcaaaattcgtgatgaagatgaaaaagttagagatagagtgaaagag
cgcgaaaaggataaggaagatcgcgaagaaagagagagggagaggaagaaagaacgcgaa
aaagaaaaggaagatcgagatgagagggagaggaagaaagagcgtgaaaaggagaaggaa
gatcgagaagagagggaaagggagagggagaggaaaagagagcgcgaaaaggagaaggaa
gatcgagaagagagggaaagggagagggagaggaggaaagaaaaagagaggagagaaagg
gagaaggagaggattcgagagaaggatagatacaaagggagtgatgatgaagttgatcgc
gaaagaaagaggagaaagagggatagtaatgatgagcattataaggagagaggggatagg
gaaaggagtagcaaaacgagtaataggttaagggaaggtagcattgatcaagtatcagca
gaaaagaatgagaagagcagagaggaagatttagcggaggagcaaagaaaattagatgac
gagatggagaagcgaaggaggagagttcaagagtggcaagagttaaaaaggaaaaaagag
gagtctgaaagggaaaagcttggggttgatgtaggtggtgaagaaccgaaattgggaaag
acttggacgttggatggtgagtcagatgacgaagatgctgaggggaaaaatgggatggat
attgatatggatgataatggtaaggtaatgaaggacgaaaatggagctggtaaaatggtt
agttctagcaatggatctgattcacctgttattcggaatgggggtgatggtgtagctgcg
gatgatgatgagattgaccctttggatgcttttatgaactctatggttttgcctgaagtt
gagaagcttagcaaatttatggttaatagcttggatgctgaaaattccagtttgaaagag
aagaacggtcctggtaaagaagaaaaacctaagatgggcgtgaagatgaccatgaagaaa
accacgggaagaattatccctggtgaagattctgattcagattatggggacgttgagaat
gatgaagatactttggaggaagaagatgatgaagaatttatgaaacgggtgaagaaaacc
aaggttgagaaactgtcattagtcgatcactcaaagattgactatccttctttcagaaag
aacttctacatagaagttaaggaaatttcaaggatgagtcctgaagaggtttctgcttac
aggaaagagcttgaacttaagatccatggcaaggatgttccaaaaccaatcagaacatgg
catcagacaggattgtcctcaaagatactagacactataaggaagctgaattatgagaag
cccatgtctattcaagctcaggctttgccagtaatcatgagtggtcgggattgtattggg
attgctaagacgggttctggtaagacacttgcatttgtattacctatgcttagacatatt
aaggaccagcctcctctggcatctggagatggtcctattgggctaataatggcccctact
agagagcttgtgcagcaaattcatagtgatattaagaaatttgcgagagtgatgggtcta
acttgtgtacctgtgtatggaggttccggtgttgctcaacaaattagtgagttgaaacgt
ggagctgaaattgttgtgtgcactccaggtaggatgatcgatattctttgtacaagtggt
gggaagatcacgaatctgcgaagagtcacttacttggtcatggatgaagctgatcggatg
tttgatatgggatttgaaccgcagataacgagaattgtccaaaacacacagccagaccgt
caaacagtcctgttttctgcaacatttcctcgtcaggttgaaatactagcccgtaaagtg
ttgaacaaacctgttgaaatacaggtaggtggtaggagtgttgtgaacagggatataaca
cagttggttgaggtgaggcctgaaagtgatagattccttcgacttcttgaattgcttggt
gaatggttcgaaaaaggtaaaattttgatatttgttcacacacaggataaatgtgattct
ttgtttagagaattgctcaagcatggttatggctgcctctcccttcatggggcaaaggat
cagactgatcgtgagtccaccatatccgactttaaaagtgatgtatgcaatttgttgatc
gctactagtatagcggcgaggggcttagatgtgaaggagcttgaactggtcatcaattat
gatgttccgaaccattatgaggactatgttcatcgtgttgggcggactggtcgagctggt
aggaaaggttgtgccatcacattcatatccgaagatgatgcaagatatgcacctgatctt
gtaaaagctttacaattgtcagagcaagttgttccagatgacctgaaagctcttgctgat
agtttcaatgcgaaggtgaatcagggacttgagcaagcacatgggactggttatggtggt
agtggttttaaatttaacgaagaagaggatgaagtgagaagagcagccaaaaaggcacag
gcaaaagaatatggatttgaggaggataaatcagattcagaggatgaagatgaaggaatt
agaaaagcaggtggcgacctcagtcagcaggccgctcttgctcaggctgctgctcttgtt
gctgcttcaaaagcgagtatggcttcagcagcaactccagtttcagttggtcagcttctt
cccaatggtggcttacctgtttcgttgcctggtgtacttggtattaatataccaggtgca
gcagcagttgctgctggaaatggtctgccagttggctctaatgatgtggcagccagagca
acagctattgcagctgccatgaacttgcagcataacttagcaaagattcaggctgatgca
atgcctgaacattatgaagcagaattagagataaatgattttcctcaaaatgcccgctgg
aaggttacacacaaggagactctgggtcctatttctgattggacaggagctgccatcacc
actcgaggacagtatgttccacctggaaaggtaccagggtttggggaaaggaagctgtac
ttgttcattgaaggccccacggagcaatctgtcaagagagcaaaagcagaattgaaacgt
gtgttggaggacattaccatgcaagcatcatctcttcctggttcggctcaaccgggcaga
tactcggttctatga
DBGET
integrated database retrieval system
