Capsicum annuum (peppers): 107850262
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Entry
107850262 CDS
T04646
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107850262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107850262
Spliceosome [BR:
cann03041
]
Complex A
U1 snRNP components
U1 related factors
107850262
Complex B
107850262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
107850262
NCBI-ProteinID:
XP_047257726
LinkDB
All DBs
Position
12:232078677..232097870
Genome browser
AA seq
1021 aa
AA seq
DB search
MRGLSGSPGKRAVNLVSEQFRTLASLRNYLAPPLAAALPPRLFSAGALRLMFHLDISYSF
PIKPPIPPLAGPALGAIPSMSLQEFQPILPAQQAQPYGSGSSQQFQPLGHANVAMPQPSQ
IQFPQPMQQVTGRPVVGRHSMPQGPPIPQDFQRNLPMSNNHMPGSGGPNLPLSSYNQVNA
DSSASQYQTQINDHRFPSGVQPWMPISNHNVNSVTTMQKTGELAAPLVVPEANYVFDPVE
TIQSDWIEHTSRKGKKYYYNRRTRISTWEKPQELMTEMERADASTDWREFTSPEGRKYYY
NKVTRTSKWRMPDEVKLAREKDSISHASDFGSIPVVKTSSPGADGSLVSVRGAKSSPIAV
SPAANLLTSFASESSSLSGKVSSMMIETVEMKNSSEPSLPAVADSEKIGIAVTLGNSVAP
PVSETTSAQDAVVYDDGFSPENREDVKKDAAITEIGGATPSDEKTVELGPLVYESKAEAK
SAFKTLLESANIGSDCTWDQAMRAVINDWRYGALKSLGERKQAFNEYLSQKKKLEAEERR
VKQKKAREDFRIMLEDCKELSPSSRWSKAISLFEHDERFKAVERAKDREDLFEDYVEELE
KKEHAKALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQ
EYIRDLESKEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYCIKIKD
FAAYLAVSSNTSGSTAKDLFTDVMDELEKQYLDDKSQIKDAVRMAEIGLTSAWTLDDFKV
AIAKYISSPPMSDTNLKFVFDELLERAREKEEKEAKKRKRLADEFYELLHASKEITASSK
WEDCKSLFGDRIMSDEGLLLEIFDKFVNELKEKERKRQEDKARKEKEREKKKEKNRRDKG
RGDKSRRERRTEKDGTGIDKADTYSFEEIRRSGSDRDKKHRKRHMSSFDDDAENEKDHSR
SSYRHDSDHKKLKQMDRHDVWSLEGKPEGQHKKQKRDRRSDSHRDGDYEDHWQFGEDGEV
Q
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccttagtgggagtccaggcaaaagggcggtgaatctagtttcagaacaattc
cgaactttggcttcgttgcgaaattatctggctccgcctctcgctgcggcattgccgccg
aggttgttttccgccggcgctcttcgtttaatgtttcatctggatattagctactctttt
cctataaagcctcctatacctcctctggctggtcctgctcttggtgctattccatccatg
tcactgcaggagttccagcctatacttccagcccagcaggcacaaccatatggttccggg
tcatctcaacaatttcagccacttggacatgcaaatgttgcgatgcctcaaccttcacaa
atccaatttcctcaacctatgcaacaggttactggtcgacctgtagtaggcaggcatagt
atgcctcagggaccacctattccccaggattttcagcgaaatcttccgatgtcaaataac
cacatgcctggttctggtggcccaaatttacctctttcttcatataatcaggtaaatgct
gattcttctgcctcccagtatcagacacagataaatgatcataggtttccatcaggggta
caaccctggatgccaataagtaatcataatgtgaattctgtgacaactatgcaaaagact
ggagaattagcagctcccttggttgttccggaagcaaattacgtatttgaccctgttgag
actattcagtcagattggattgagcacacttctcggaaggggaaaaaatactattataat
agaaggacaagaatctctacctgggagaaacctcaagagctgatgacagaaatggagagg
gcagacgcatcaactgactggagagaatttacaagtcctgagggaagaaagtattactac
aacaaggttactagaacgtccaaatggagaatgcctgatgaagtcaagttggctcgtgaa
aaggacagcatttcgcacgcttctgattttggatccattcctgttgttaaaacatcatcc
ccgggtgcagatggttcattagtctcagtacgcggtgctaaatcaagcccaattgctgtg
tcaccagctgctaacttactaactagttttgcttcagaatcatcaagtttatctggtaag
gtttcttcgatgatgattgaaacagtcgaaatgaagaattcttcagaaccttctttgcca
gctgttgctgattcggagaaaattggaatagcagtaaccttgggaaattctgtcgcgcca
ccggtttctgagactacttcagctcaagatgcagtagtgtatgatgatggattttctccg
gagaatagagaggatgtcaagaaagatgctgcaataactgaaatcggaggtgctactcca
tcagatgagaaaacagtcgagctgggaccattagtttatgagagcaaagcggaggcaaag
agtgcattcaaaacacttttggaatctgcaaatattgggtctgattgcacttgggatcag
gccatgagagcagtaattaatgactggagatatggtgctctaaaatcccttggtgagcgg
aagcaagcttttaatgagtatctgagccaaaagaaaaaactggaagctgaagagaggcgt
gttaaacagaaaaaagctcgggaagatttcaggataatgttagaagattgcaaggagctg
tcaccatcgtcaagatggagtaaggcaatctccctattcgaacatgatgaacgttttaaa
gctgtcgagcgagctaaagaccgtgaggacctttttgaagattatgtggaggaacttgag
aaaaaggagcatgcgaaggcattggaggagcagaagcgcaatagagtggagtacttagaa
tttttaaaatcctgtgactttattaaggccagtagccagtggcggaaagttcaggaccgc
ttggaagctgatgaaagatgctcccgccttgagaaaatcgaccgcttggagattttccag
gaatatatacgtgatttagagagcaaagaggaggagcaaaggaaactgcggatggaagaa
ttgaggaaagctgaacgtaaaaatcgtgatgagttccgaaaactgatggaagagcatgtt
gctgcgggaatacttaatgcaaaaactaactggcgtgattattgcatcaaaattaaagat
tttgctgcatatctggctgtctcatcaaatacttcaggatcaacagcaaaagatttattt
acagatgttatggatgagctggagaaacagtatcttgatgacaagtcacaaattaaagat
gcagttaggatggccgagattggattgacatcagcgtggacgcttgatgattttaaggtt
gcaatcgccaagtatattagctctccaccaatgtcagataccaacttaaagtttgtcttt
gacgagttactggaaagggccagggagaaagaagaaaaagaagctaaaaagcgtaaacgt
ctagcagatgagttctatgaacttcttcatgcatcaaaggaaattactgcatcatcgaaa
tgggaggactgcaaatccctcttcggagatagaataatgagtgatgagggcttgctgctt
gaaatatttgacaaatttgttaatgaactaaaagagaaggagcggaagcgtcaagaggat
aaggcaagaaaagagaaggaaagagaaaagaagaaggaaaaaaatagaagggataaaggc
cgaggggataaaagcaggagagagagaagaaccgagaaagatggtacaggcatcgacaag
gctgatacttacagtttcgaggagatcagaaggtcaggaagtgacagagataagaaacac
cgcaagcggcatatgagttcctttgatgacgacgctgaaaatgagaaagatcattcaaga
agttcgtacagacatgacagtgatcataagaagctaaaacagatggaccggcatgatgtc
tggagtttggaaggtaaaccggagggccagcataagaaacaaaagcgagatcgtcggagt
gattctcatagggatggtgactatgaggatcactggcaatttggtgaggatggagaagtt
cagtag
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