Capsicum annuum (peppers): 107850753
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Entry
107850753 CDS
T04646
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107850753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107850753
03019 Messenger RNA biogenesis [BR:
cann03019
]
107850753
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107850753
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107850753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107850753
NCBI-ProteinID:
XP_016550983
LinkDB
All DBs
Position
12:222848557..222861995
Genome browser
AA seq
968 aa
AA seq
DB search
MALAEAVIVPPPPKPLAPSIIDRYRAALREREEEIRATMPEEDDDVIVVPPNMEEIVRLY
DLLLSELTFNSKPIITDLTIIAGEQQEHAEGIADAICGRILEAPVEQKLPSLYLLDSIVK
NIGRDYVRHFSAHLPEVFCEAYRQVHPSMHSAMRHLFGTWSTVFPAPVLRKIETHLQFSQ
PGIQQSSGLTSSRASESPRPTHGIHVNPKYLEARRQLGHSTIDSARAENSTGHTSSDLEA
RQVLSTASKNVRSSSPYRVGPPRSLSPTLDEFAVDNSSIGLREGASPSHPALDYGLNRVR
GRDDERSEWQRILPDDANQQPDIPVKYSVNKGIDLQGHRALIDAYGIDEREKLFNQRQQK
IGNATINGLGGRLAVKTWQNTEEEEFNWEDMSPTLADQNPFNDLSTSLRHPQSIRMRPGV
DSQHTVPLVTDPRRSWSHRGQYSLVHDPSLDDVHSSGRGARNKITGYCDETSLISGSHYL
QKLPENVPQLPQRHLKGEGSGISSATGESKHPLISNLAADGHTWRPPYAPPPRMNSTFDP
PVQDIRVVTGRAPVVPWPPTSVHNPQYLASKPVLPHNHISSPFEVKNTSNSVVNHILDRP
VLPEQHIDNLKSSSYAKFPQFPGQHPTSFSASHQNPEQMASAEPQLLLSQPIHQTTPPSA
SLPSSNHLLLPPIYRYPPPGPGSSIGTLFPRPVPAPQVSMPLVNVPNTSSQFSSGALPPL
PRGPLPMSFQFMPTSQNLAPVTPNPPAGGFSSLISSLMAQGLISLTNQAPAQDSVGLDFN
PDLLKVRHDSAVTALYADLPRQCTTCGLRFKCQESHSSHMDWHVTKNRVSKNRKQKSSRK
WFVSVNMWLSGTEALGSDAVPGFLPTEQVVETKDDEELAVPADDEQNACALCGEPFDDFY
SDETEEWMYRGTVYMNAPSGSTVGMERSQLGPIIHAKCRSESSATPYEDSRRVDEGQEDG
SQRKRMRS
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcattagccgaagccgtcatagtgccgccgccaccaaaaccgttagcgccgtcgata
attgatcggtacagagcggcgttaagggaacgggaagaagaaattagggctactatgccg
gaggaagatgatgacgtcattgttgtgccgcctaacatggaggaaattgttaggctatat
gacttgttgttatcggaattgacgttcaattcgaagccgattattaccgaccttactata
attgctggtgaacaacaagaacatgctgaaggcattgctgatgcaatttgtgggcggatt
ctcgaggccccagttgagcagaaactaccctcattgtacctgctggatagtattgtaaag
aatattggcagggactatgtcaggcatttctctgcccatttgcctgaggttttctgtgaa
gcatacaggcaagtgcaccctagcatgcattctgcaatgcgccacctctttgggacatgg
tcaactgtgtttccagcacctgtcctccgtaaaattgagacccatctccagttttcgcag
ccgggtatccagcaatcttctggcttgacttcgtcaagagcatctgaatcaccacgacca
actcatggcattcatgtaaatccaaaatatttggaagcaaggcgtcagcttgggcactcc
actattgattctgcgagagctgaaaattctacaggccatacatcttcagatctggaagca
agacaggtgctttctacagcttcaaagaatgtgagatcatcctccccttacagagtgggg
cctccgaggtcattgtcacccacccttgacgagtttgcagtggataattcttccattgga
ctcagagaaggggcctctccatctcatcctgcacttgactatgggcttaacagagtgaga
ggtagagatgatgagaggagtgagtggcagagaattttgcctgatgatgccaatcagcaa
ccagacattccagttaaatatagcgtgaacaagggaattgatctacaaggacatagagct
ttgattgatgcctatggaattgatgaaagggaaaaattattcaatcagaggcaacaaaag
atagggaatgccactattaatggcttaggtggtaggttagccgtaaagacgtggcaaaat
accgaagaagaagagttcaattgggaagatatgagtccaactttagcagatcagaatcct
tttaatgatttgtcaacatctcttcgccatcctcagagtattaggatgagacctggtgtt
gattcacaacatactgtgcctttggtgactgaccctagaaggagctggtctcatcgagga
caatattctttagttcatgacccttccttggatgatgttcactcgtctggtcgaggggcg
agaaataaaattactggatattgcgatgagacatctctgatttcaggttcacattatctt
caaaagcttccagaaaatgtgccacagttgccccaaaggcatttaaaaggtgaaggaagt
ggaatctcatcagccactggtgaatccaagcatcctttgattagtaatttggctgctgat
ggacatacctggaggccaccatatgctcctccgccaagaatgaattctacttttgaccct
ccagttcaggatattcgggtggttactggacgggcccctgttgtaccatggcctcccaca
agtgtgcataatccccaatatttggcttcaaaacctgttctgcctcataatcatatcagt
agtccctttgaagtaaagaacactagcaattcagttgtcaatcatatcctggacagacca
gttcttcctgagcaacatattgataatttgaagagcagctcatatgccaagtttccacaa
tttcctggtcaacaccccacatcattttctgcaagtcaccaaaaccctgaacaaatggct
tcagcagaacctcagctattgctttctcagcctattcatcagactacacctccaagtgcc
tcacttccaagctcaaaccatttgctgttaccaccaatctatcgataccctccgccaggt
cctggttcttccataggtactctatttccccgtccagttccggctccgcaggtgtctatg
ccattggttaatgtaccaaatacatcatcacaattttcctcaggagccttaccacctttg
cccagaggcccacttcctatgtcttttcaatttatgccaacatcacaaaatctagctccg
gtcactcctaatcctccggcaggaggcttttcaagcttgattagctcactgatggctcaa
ggtttgatttcattgaccaatcaagctcctgcacaggattcggtgggccttgattttaat
ccggatcttcttaaggttcgtcacgattctgctgtaactgctttatatgctgatctcccg
agacagtgcacaacctgtggcctacggtttaaatgtcaagagtctcacagcagtcatatg
gattggcatgtaactaagaatcgagtatcaaaaaatcgcaagcagaaatcttctcgtaag
tggtttgtaagtgtcaacatgtggcttagtggtacagaggctttgggatctgatgcagtt
cctgggtttctaccgactgagcaagttgtggaaacaaaggatgatgaagaattggccgtc
cctgctgacgatgagcagaatgcttgtgcactgtgtggagagccttttgatgatttttac
agtgatgagactgaagaatggatgtatagggggactgtctacatgaatgcaccaagtgga
tcaactgttggaatggaaaggtctcagttgggtccaattattcatgcaaaatgcagatct
gaatctagtgcaacaccatatgaggactctagaagagtggatgagggtcaggaagatgga
agtcaaaggaaacgaatgcggagttag
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