KEGG   Capsicum annuum (peppers): 107850753
Entry
107850753         CDS       T04646                                 
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107850753
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cann03021]
    107850753
   03019 Messenger RNA biogenesis [BR:cann03019]
    107850753
Transcription machinery [BR:cann03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     107850753
Messenger RNA biogenesis [BR:cann03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     107850753
SSDB
Motif
Pfam: CID zf_UBZ
Other DBs
NCBI-GeneID: 107850753
NCBI-ProteinID: XP_016550983
LinkDB
Position
12:222848557..222861995
AA seq 968 aa
MALAEAVIVPPPPKPLAPSIIDRYRAALREREEEIRATMPEEDDDVIVVPPNMEEIVRLY
DLLLSELTFNSKPIITDLTIIAGEQQEHAEGIADAICGRILEAPVEQKLPSLYLLDSIVK
NIGRDYVRHFSAHLPEVFCEAYRQVHPSMHSAMRHLFGTWSTVFPAPVLRKIETHLQFSQ
PGIQQSSGLTSSRASESPRPTHGIHVNPKYLEARRQLGHSTIDSARAENSTGHTSSDLEA
RQVLSTASKNVRSSSPYRVGPPRSLSPTLDEFAVDNSSIGLREGASPSHPALDYGLNRVR
GRDDERSEWQRILPDDANQQPDIPVKYSVNKGIDLQGHRALIDAYGIDEREKLFNQRQQK
IGNATINGLGGRLAVKTWQNTEEEEFNWEDMSPTLADQNPFNDLSTSLRHPQSIRMRPGV
DSQHTVPLVTDPRRSWSHRGQYSLVHDPSLDDVHSSGRGARNKITGYCDETSLISGSHYL
QKLPENVPQLPQRHLKGEGSGISSATGESKHPLISNLAADGHTWRPPYAPPPRMNSTFDP
PVQDIRVVTGRAPVVPWPPTSVHNPQYLASKPVLPHNHISSPFEVKNTSNSVVNHILDRP
VLPEQHIDNLKSSSYAKFPQFPGQHPTSFSASHQNPEQMASAEPQLLLSQPIHQTTPPSA
SLPSSNHLLLPPIYRYPPPGPGSSIGTLFPRPVPAPQVSMPLVNVPNTSSQFSSGALPPL
PRGPLPMSFQFMPTSQNLAPVTPNPPAGGFSSLISSLMAQGLISLTNQAPAQDSVGLDFN
PDLLKVRHDSAVTALYADLPRQCTTCGLRFKCQESHSSHMDWHVTKNRVSKNRKQKSSRK
WFVSVNMWLSGTEALGSDAVPGFLPTEQVVETKDDEELAVPADDEQNACALCGEPFDDFY
SDETEEWMYRGTVYMNAPSGSTVGMERSQLGPIIHAKCRSESSATPYEDSRRVDEGQEDG
SQRKRMRS
NT seq 2907 nt   +upstreamnt  +downstreamnt
atggcattagccgaagccgtcatagtgccgccgccaccaaaaccgttagcgccgtcgata
attgatcggtacagagcggcgttaagggaacgggaagaagaaattagggctactatgccg
gaggaagatgatgacgtcattgttgtgccgcctaacatggaggaaattgttaggctatat
gacttgttgttatcggaattgacgttcaattcgaagccgattattaccgaccttactata
attgctggtgaacaacaagaacatgctgaaggcattgctgatgcaatttgtgggcggatt
ctcgaggccccagttgagcagaaactaccctcattgtacctgctggatagtattgtaaag
aatattggcagggactatgtcaggcatttctctgcccatttgcctgaggttttctgtgaa
gcatacaggcaagtgcaccctagcatgcattctgcaatgcgccacctctttgggacatgg
tcaactgtgtttccagcacctgtcctccgtaaaattgagacccatctccagttttcgcag
ccgggtatccagcaatcttctggcttgacttcgtcaagagcatctgaatcaccacgacca
actcatggcattcatgtaaatccaaaatatttggaagcaaggcgtcagcttgggcactcc
actattgattctgcgagagctgaaaattctacaggccatacatcttcagatctggaagca
agacaggtgctttctacagcttcaaagaatgtgagatcatcctccccttacagagtgggg
cctccgaggtcattgtcacccacccttgacgagtttgcagtggataattcttccattgga
ctcagagaaggggcctctccatctcatcctgcacttgactatgggcttaacagagtgaga
ggtagagatgatgagaggagtgagtggcagagaattttgcctgatgatgccaatcagcaa
ccagacattccagttaaatatagcgtgaacaagggaattgatctacaaggacatagagct
ttgattgatgcctatggaattgatgaaagggaaaaattattcaatcagaggcaacaaaag
atagggaatgccactattaatggcttaggtggtaggttagccgtaaagacgtggcaaaat
accgaagaagaagagttcaattgggaagatatgagtccaactttagcagatcagaatcct
tttaatgatttgtcaacatctcttcgccatcctcagagtattaggatgagacctggtgtt
gattcacaacatactgtgcctttggtgactgaccctagaaggagctggtctcatcgagga
caatattctttagttcatgacccttccttggatgatgttcactcgtctggtcgaggggcg
agaaataaaattactggatattgcgatgagacatctctgatttcaggttcacattatctt
caaaagcttccagaaaatgtgccacagttgccccaaaggcatttaaaaggtgaaggaagt
ggaatctcatcagccactggtgaatccaagcatcctttgattagtaatttggctgctgat
ggacatacctggaggccaccatatgctcctccgccaagaatgaattctacttttgaccct
ccagttcaggatattcgggtggttactggacgggcccctgttgtaccatggcctcccaca
agtgtgcataatccccaatatttggcttcaaaacctgttctgcctcataatcatatcagt
agtccctttgaagtaaagaacactagcaattcagttgtcaatcatatcctggacagacca
gttcttcctgagcaacatattgataatttgaagagcagctcatatgccaagtttccacaa
tttcctggtcaacaccccacatcattttctgcaagtcaccaaaaccctgaacaaatggct
tcagcagaacctcagctattgctttctcagcctattcatcagactacacctccaagtgcc
tcacttccaagctcaaaccatttgctgttaccaccaatctatcgataccctccgccaggt
cctggttcttccataggtactctatttccccgtccagttccggctccgcaggtgtctatg
ccattggttaatgtaccaaatacatcatcacaattttcctcaggagccttaccacctttg
cccagaggcccacttcctatgtcttttcaatttatgccaacatcacaaaatctagctccg
gtcactcctaatcctccggcaggaggcttttcaagcttgattagctcactgatggctcaa
ggtttgatttcattgaccaatcaagctcctgcacaggattcggtgggccttgattttaat
ccggatcttcttaaggttcgtcacgattctgctgtaactgctttatatgctgatctcccg
agacagtgcacaacctgtggcctacggtttaaatgtcaagagtctcacagcagtcatatg
gattggcatgtaactaagaatcgagtatcaaaaaatcgcaagcagaaatcttctcgtaag
tggtttgtaagtgtcaacatgtggcttagtggtacagaggctttgggatctgatgcagtt
cctgggtttctaccgactgagcaagttgtggaaacaaaggatgatgaagaattggccgtc
cctgctgacgatgagcagaatgcttgtgcactgtgtggagagccttttgatgatttttac
agtgatgagactgaagaatggatgtatagggggactgtctacatgaatgcaccaagtgga
tcaactgttggaatggaaaggtctcagttgggtccaattattcatgcaaaatgcagatct
gaatctagtgcaacaccatatgaggactctagaagagtggatgagggtcaggaagatgga
agtcaaaggaaacgaatgcggagttag

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