Capsicum annuum (peppers): 107859397
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Entry
107859397 CDS
T04646
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03022
Basal transcription factors
cann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107859397
09124 Replication and repair
03420 Nucleotide excision repair
107859397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107859397
03400 DNA repair and recombination proteins [BR:
cann03400
]
107859397
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107859397
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107859397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
107859397
NCBI-ProteinID:
XP_016559882
LinkDB
All DBs
Position
2:129647274..129655615
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AA seq
453 aa
AA seq
DB search
MPQVKIVARNFMDMVASLPTMKLDMLYDNSFICEAILRSLPPLAKKYVLQLLYIDKPISA
KTMEEWVLPDGFSKHKVAIDRLIQLRVMTETYDRKKEATYQLNPKFQFNLQKHIVHGGVL
PREPMPSNITVRLPSLEELEAYAAEQWECFLLHLISSSEAGKTTNMSSSMMKIFQRGLLS
QRDDREPSRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTG
KAYNINTLTDLQRSIIRDLSDLGLVKLQQGRKEGWFIPTKLATNLSISLADTTSRKQGFI
VIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITAEQIISF
LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMMPAHLYDEFPSKDVFEAACDFARE
YGAFLWEDSKRMRLIVKADILNEMKEFLRRQKQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaagatcgtggcgaggaatttcatggacatggtggcttcattgcctaca
atgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcatta
cctcccttagcaaagaagtatgtgctgcaattgttgtatatagacaaaccaatttcagcc
aagacgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgat
agattgatacagctgagggtaatgacagaaacatatgacaggaaaaaggaagccacttat
cagctaaacccaaaatttcaatttaatcttcagaagcatatagtccacggtggagtctta
ccgagggaaccaatgccttctaatatcaccgtgaggcttcctagcttggaggagttagag
gcatatgccgctgaacagtgggagtgctttctgctgcaccttataagctccagtgaagct
ggaaagaccacaaacatgagctcttcgatgatgaaaattttccagcgtggacttttaagt
cagagagatgatagagaaccttcaaggttgacggaaagtgggttccagttcttgctaatg
gacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcga
ggtgtggattcagcagatcttattgcttttctcttggagctaagctttcatgttactggc
aaggcatacaacataaacacattaactgatctccagcgaagtataattagggacctttca
gatttgggactggttaagctgcagcagggaaggaaagagggctggtttattccaaccaaa
ctggcgaccaacctgtcaattagcttagcagatacgacatcaaggaaacagggatttatc
gttattgaaacaaacttcagactgtatgcatattcaacatcaaaattacactgtgagatc
ctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaat
aaagaaagtttgtataaagcttttcaaaatggcattactgctgagcagataatttctttt
cttcagcagaatgcacatcctagggttgctgagaggataccatctgtgccagagaatgtt
actgatcagattcgattgtgggaatctgatctgaatcgggttgagatgatgccagcacac
ctctacgatgaattcccctctaaagacgtctttgaggctgcatgtgattttgccagagaa
tatggagcatttctgtgggaggactcaaagcgaatgcgtctcatagttaaggctgatatt
ttgaatgagatgaaggaatttcttcgtcgtcaaaagcaatag
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