Kaistella antarctica: NCTC13489_01399
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Entry
NCTC13489_01399 CDS
T06886
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cant
Kaistella antarctica
Pathway
cant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13489_01399 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cant03019
]
NCTC13489_01399 (rny)
Messenger RNA biogenesis [BR:
cant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13489_01399 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Lipid_bd
Motif
Other DBs
NCBI-ProteinID:
VEH99200
UniProt:
A0A3S4YJQ5
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Position
1:complement(1526451..1528025)
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AA seq
524 aa
AA seq
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MTTTIAIIIGIACLAVGAVIGMMFSKSTLNAKAKFIVQDANKNAENLIEKATVQAESIKK
EKHFQAKEKFMELKSQHDADIQSRERKMQDSEKRVKDKEQKLNDDLSKAGKLEKDLDRQI
VDYGKKQEMIERKQQELDSITAQKVEILERLSGYSAEDAKNELVEALKAEAKTKAQSHIQ
NIMAEASLNAKQEAKKIVIQTIQRIGTEQAIENSVSVFNIESDEVKGRIIGREGRNIRAL
EAATGVEIIVDDTPEAILLSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVEKTKKHIE
EEIIEVGKRTVIDLGVHGLHPELVKIVGRMKFRSSYGQNLLQHSREVANIAGTMAAELGL
NVKLAKRAGLLHDIGKVPEQESELPHALLGMQWAEKYGENAEVVNAIGAHHDEVEMTTLL
SPIIQVADAISGARPGARRQVLESYIQRLKDLEAAALSFDGVSSAYAIQAGRELRVMVES
GKVTDDQSAQLSYDISEKIQNELTYPGQVRVTVIRETRAVNIAR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacaattgctataattatcggtattgcttgtttggctgtaggtgcggtaatt
ggaatgatgttttccaaaagcacgcttaacgcaaaagcaaaattcatcgttcaagatgca
aataaaaacgccgagaaccttatagaaaaagctacggtacaggcagaatccattaaaaaa
gaaaaacattttcaagcaaaagaaaagttcatggaactgaaatctcagcatgatgccgac
attcagtctagagaacgaaaaatgcaggattctgaaaagagagttaaagacaaagagcaa
aagctcaatgatgatcttagcaaagccggcaaattagaaaaagatctcgatcgacaaata
gttgattacggtaagaagcaggagatgatcgaaagaaagcagcaggaattagattctatc
actgctcaaaaagtagaaatcttggaaagactttcaggatattctgcagaagatgctaag
aacgaattggtagaagctttgaaagcagaagccaaaaccaaagcgcagtcgcacattcaa
aacataatggcggaagccagtttgaatgcgaaacaagaagctaagaaaatcgtcattcag
accattcaaagaattgggacggaacaggcgattgagaattcagtctctgttttcaatatc
gaatctgatgaagttaaaggtagaattatcggtagagaaggtcggaacatccgagctcta
gaagctgcaacaggggttgaaatcattgttgatgatacgccggaagctattttactttct
tgctttgatcctgtaagaagagaaatcgcaagattatcactacaccggttggtaactgat
ggaagaattcacccagcgcgaattgaagaagtagttgagaaaacgaaaaaacatattgaa
gaagaaatcatcgaagttggtaaaagaactgtgattgatttaggagttcacggacttcac
ccagaattggtgaagatcgtgggacgaatgaaattccgttcttcttatggacagaactta
ttgcaacactcgagagaagttgccaacattgccggaaccatggcagcagaattaggattg
aatgttaagttggcgaaaagagctggtttacttcacgatatcgggaaagttccagagcag
gaatcagaactcccacacgcacttttaggaatgcagtgggctgaaaaatatggcgaaaat
gcagaggttgtcaacgcaatcggagctcaccatgatgaagtagaaatgacgactttatta
tcaccaatcatccaagttgccgatgcaatttcgggagcaagaccaggagctagaagacaa
gttctggagtcttatatccaaaggttgaaagatcttgaagcagcagcgttaagtttcgac
ggcgtttccagtgcatatgcaattcaagctggtagagaacttagagtaatggtagaaagt
ggaaaagtgactgacgaccagtctgcccagctttcttatgatatttcggagaagattcaa
aatgaattaacctatccaggacaagttcgggtaacggtaattcgggaaactagagccgta
aatattgcgagataa
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