Crassostrea angulata (Portugese oyster): 128165348
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Entry
128165348 CDS
T09348
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Pathway
canu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128165348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
canu03400
]
128165348
Enzymes [BR:
canu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128165348
DNA repair and recombination proteins [BR:
canu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128165348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
128165348
NCBI-ProteinID:
XP_052685723
EnsemblRapid:
LOC128165348
LinkDB
All DBs
Position
10:42846954..42853874
Genome browser
AA seq
915 aa
AA seq
DB search
MDEEDVDTKPELTVASQVSFAELCGLLEKISKTHGNEKKKAVLGTFVEKWREFHQELHKD
NPDTTDSFYAAMRLLVPQLEKQRAAYGIKEHMLAKLLIEVLCLGKDSADSNRLLNFKAPK
AAKGDAGDFAAVAYFVLKNRCPEKGTLTIQEVNNCLDGIATNNAAKKKDLVRKNILKLLT
NMSAIELKWLIRMIVKELKVGLSQTSVFSVYHPDAEEFYNVNNNLEKVCRMLRDKSVRVH
EIGIEIFSPFTPMLGERAAPDQVEKLMDGKPYIIETKFDGERILLHKQEGEYKYFSRSGN
EYTSTFGSNRYDGNMTPFIHECFQSSVKSCILDGEMIGYDAATKTFATKAMNTDIKHQRE
EGYQPCYYAFDLIMLNGRVLTNHPLKERLELLKTVFKEEEGRLFLSKHTEANTNQDCAEA
LNEAIDGREEGIMVKKPDSVYRPNTRKGGWFKIKPEYVGGLMDELDVLVVGGFFGVGHRS
GMMSHFLCALAVPKEDGSHPTVFHSFCKVGSGYSKKELAEFNKKLAEHWKVFNKKSPPSS
IILASGFKEKPDAYIEPKNSCIVQIKAAEVIDSERFKTGFTLRFPRVEKFRDDKAWYECM
TVPEVQEMKDRAGGKLAGGKVELREEEEPTKKKRKVVTHVIRPTLGAQFQAADLSDVTQT
SKIFEGKEFCVINGPSSLSKAAIEKKVAEYGGSVVQNPGSTTFCVLADKVVMRVTNLMKR
DLYDIVKVDWFKRCLDAQTFIPWAPADMIHTSAKTQMALKKDYDEFGDSYMQDTTPDQLK
YTFQHMDNSEISISTDEMAELEEKYFPDDSPYGLFRTCRFYLDNKLVIGDPSTQIKDSSL
EFLALELRFFGGTVSDSLDKKVSHVMVDKRDLSRVQELKQERRKRSRKFHIVSEDWLRQC
LEEGSLCSERQFEPS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagatgtggacaccaaaccagaactgacggttgcgtctcaggtgtctttt
gccgaactgtgtggattgttggaaaagatctctaaaacccatggcaatgagaaaaagaag
gctgtgctggggacatttgtggagaaatggcgtgaatttcatcaggagttgcataaagat
aatccagataccacggactcattttatgcagctatgcgactcttggtgccacaacttgaa
aagcaaagagcagcttatggaataaaagagcatatgttggctaaactcttgattgaagtc
ctgtgtctgggaaaggacagtgcagattctaacagactactgaacttcaaagcacccaaa
gctgccaaaggggatgctggagactttgcagctgtggcttactttgtgctaaaaaatcgc
tgccctgaaaaagggacactgacgatacaggaagtcaacaactgcttagatggcattgcc
acaaataatgcagcgaagaaaaaagaccttgtccgtaagaacatcctaaagcttctgacc
aatatgtctgctattgaactgaagtggctgatccggatgatagtgaaggaactaaaagtt
ggactgagtcagacgtctgtgttcagtgtgtatcaccctgatgctgaggaattctacaat
gtcaacaacaatctggaaaaggtttgtcgaatgttgagggacaaaagtgtaagagtgcat
gagattggaatagagatattttctcctttcactccaatgcttggggagagagcagcacca
gatcaggttgaaaaactaatggatggcaagccatacatcatagaaaccaaatttgatgga
gagagaattcttctacacaaacaggagggagaatacaaatatttctccaggagcggtaat
gaatacacaagcacctttgggtccaatcggtacgacggaaacatgacaccattcatccat
gaatgctttcaatcatctgtgaaatcctgcatattggatggagaaatgataggatatgat
gcagcaacaaaaacatttgccactaaggccatgaacacagatataaagcaccagagagag
gagggatatcagccgtgttattatgcttttgacctcattatgctcaatgggcgtgtcctc
acaaaccatccactgaaggaacgcttggagttactgaagactgtgttcaaagaggaagag
gggaggctctttctgagtaaacacacagaggccaacacaaatcaagactgtgcagaggct
ctgaacgaggccattgatggcagggaggaggggatcatggtcaaaaaaccagactctgtg
tatcgacccaacaccaggaaggggggctggttcaaaatcaaaccggagtatgtgggagga
ctgatggatgaactagacgtcctggtcgtggggggtttctttggggtggggcaccgaagt
gggatgatgtcccactttctttgtgcattggcagttccgaaggaagatgggagccatcca
actgtcttccattctttctgcaaggttggatcagggtattctaaaaaagaacttgcagag
tttaacaagaaacttgctgagcactggaaggtctttaacaagaaaagtccaccctcttct
attatactggcttccggatttaaagagaaaccagacgcatacattgaaccaaaaaactca
tgtatagttcagatcaaggcagcagaagtcatagacagtgagagatttaaaacaggcttc
actctgagatttccccgtgtggagaaattccgtgatgacaaggcgtggtacgagtgtatg
acagtacccgaggtccaagaaatgaaggatagagctgggggtaaacttgctggaggcaaa
gtggagctgagggaggaagaggaaccaaccaagaaaaaacggaaagttgtgacccatgtc
atccgacccactctgggtgctcagttccaggcagcagatttgtctgacgttactcagaca
tccaagatctttgaaggaaaagagttctgtgtgatcaatggtccctcttctttaagtaaa
gcagcaattgagaaaaaagtggcagagtatggaggttctgttgttcaaaacccaggatct
accacattttgtgtgctggctgacaaggttgtcatgagggttacaaacctgatgaagcgt
gacctgtatgatattgtaaaggttgactggttcaagagatgcttggatgcacagacattt
attccatgggcacctgctgatatgatccacacctcagcaaagacacagatggctctgaag
aaggattatgacgagtttggagatagttatatgcaggatactactccagatcaactcaag
tacacctttcaacacatggataatagtgaaatatccatttcaacagatgaaatggctgaa
ttggaagagaaatatttccctgatgattctccatatggattgttcagaacatgcagattt
tacttggacaacaagcttgtaataggtgatccctcaacacaaatcaaagactcgtctttg
gaattcctggccttggagctgaggttttttggcggaacagtctccgactctctggacaaa
aaagtctcccatgttatggttgacaaaagagatttgagcagagtacaagagttaaaacaa
gagagaagaaaaagaagtaggaagttccacattgtgagtgaggattggctgcgacagtgt
ttagaggagggcagtctgtgctcagagagacagtttgaaccgtcctga
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