Crassostrea angulata (Portugese oyster): 128165447
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Entry
128165447 CDS
T09348
Name
(RefSeq) helicase with zinc finger domain 2-like isoform X1
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128165447
Enzymes [BR:
canu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
128165447
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128165447
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128165447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
AAA_12
AAA_11
AAA_30
AAA_19
SLFN-g3_helicase
DEAD
ResIII
nSTAND3
PAN_1
Motif
Other DBs
NCBI-GeneID:
128165447
NCBI-ProteinID:
XP_052685943
EnsemblRapid:
LOC128165447
LinkDB
All DBs
Position
10:complement(12599324..12617416)
Genome browser
AA seq
2027 aa
AA seq
DB search
MELDDNWLIFFQAGLVHIQEKNDTEQALAYAWQLYSSGEKYYSELEEEDTALNIYRHCSI
LLNLINDKGRNDPFLRTKCFYREKLLSSQPIDPSCVWIPFLFDPDIILVKKIKLLRDIST
MIDEYSDLEHINVWPCRLEIKISYENLLVFYREHLSSIDFINRERFNYFIQSGWKLLEKN
HTQLVCRMCQSISRSFDQLPKTQSLELSKLWADALEKDGHIELAIKKAQEANDKDLVARL
NEELEDLKSDSEPDEEWIRGTLAEHVTQSLEQAKEREKLPKKKRRSRPKWKHNDEHLDQS
TTVHSVIADVTSHITNWKDVTEFDLPVYKPRRKRKPCQLKSQQQKQDQPLLRSKVARSIN
KKAPSTEDKFDQLPSELPAGYSSGDESSSDDDFFSMDEDEQKLFEPLDGKTFYEDSCKVY
NTQGQSQNIDDCLLTNGLALSDECVSGMTFKAKSIYDEMRSPDECMDLCKKNPERYRLCR
VEIFNSHKAVCRTVNDNIEIEISGRSKCGKVFNQDEVVVEIFEYRKPLHKTQSQSAEDNK
VYGKVIGQIKTNENRPKHPVLVCTLDHFCMYHMKPLCKTVPKIHILSKKRDKESQVEIYE
YTKQTKKLTFDRLKTIDQSKRGEYLFLVCFISWNGMYPLGAVIGVFDGKRDIQTSIRLVC
LRNNVSVLYKENTVRETEKLLSSQMPDQNDEQNREDYSDSLNVFTIDGNDTKDLDDAISV
QIISENEFEVGIHISDVGSCIKKDDPIDVEAKERSTTYYPGEGCPPYHMLPEPIGTDMCS
LLPGQKRKALSIFYKIDILGKILDYKIKPTLIKSRTRLTYRKAQEILSSENDNIDLRKEL
CYLRDISRIFRSERLGNKVFSFPFEPFNTSSESYFQSLDAHHIVEELMILVNKTVGQDLI
KAFPDCIPLRVQPAPSACKIREWLQQYPVIGHFILSLQQQNLPTNNNLAFENVLDGQNSK
QLQIQKYVWKKIESDFRTEEYQNVERWIGTDQFHPQQAMAYDSWISFQETSSYQCSGASH
DKTHYSLGIYPYLHFTSPIRRYADLIVNRLVHAMIDDEKSPYNKKEMEMICRKINSQSRA
FKKQCRLLHLARKLQNQPIMFHSLLNSTTDNAMSLCFPGLKELSKSSGQIQFSSLKLKSK
PYFEESKNTDVLFTLSWVQRLYSPYAYASFPGGTVSRREPVKLDPHQRVIFLSLEKWKKL
LDYLVNRNIKFLDIDIFEKETLVKCRECVGTHTDVTSESKDGIIKKLQSEFSLTFSKGQI
ISVQMGCEKKGGLPVPEIQMLELTNNVKCCIQHMSDPVRCFAVYSNVHAGNRRMTSSEYI
QRWLKIFRMESATNAAKSTSIIINDLRVNFQNGERYDGSFVLLKTFCMERDIYIEYAWND
EKKDDKERIISFQTDFLCIRCDMVKEVPSKSKAGCPPNERWIWIGHGETKCFQIGKENEN
IKVHFNLHKDACTPTASMFDQSAIDKLTCTVEILPMADADKHIEKALAGLDKATPLARSI
ALKEKRPSLDETHCRLARQIGYDVKSKDMQPNNEKQSEAIKKALASRFSLIQGPPGTGKT
LTGIKLIILFNRINLKHREEGGDHKQVVYCGPSNKSVDLVAKWMKTHIPDICPKIVRMYG
NSMENMIYPIPNREYINQRSCKDNRPDSDLNEISLHTLIRKKGKPYAERLAMFEKQFKNS
PDDIATEDILKYKKAISMATQEELKQYDVIFCTTAAALSPKFLRATDGKIFQLIIDEAGM
CTEPETLAPIIATKADQVVLIGDHKQLQPIIFCPEASDLGLSKSLFERYADSAVFLDTQY
RMNLKICEFPSKQFYKGQLKTGPVGKWTVKKPLQIWQRPDVPLLFCHIEGEEECLPVTTE
EGNQQSRSNRAEVDHVVKVYEYLMSHDKMDKDDVKVMSQYNAQCFAIRDALKKKRFINSK
VTTAVSSQGGEWDYVIFSAVRSLPKFRIESNRNKGWCKKNLGFITDAHQINVVLTRARKG
IIIIGNKNLLQCDENWEALIKHYTRLDCVVNAEDQNLTPLKRPGRRH
NT seq
6084 nt
NT seq
+upstream
nt +downstream
nt
atggaactcgatgacaactggctaatttttttccaagctggtcttgtccatattcaagag
aaaaatgacacagagcaagctttggcatacgcgtggcagttgtacagttctggtgagaaa
tactacagtgaacttgaggaggaagatactgcacttaatatctacagacattgttcgatt
ttgttgaacctgataaatgacaaggggagaaatgatccatttttgaggacgaagtgtttc
tacagagagaaactactctcatcccaaccgatagacccatcatgtgtttggatcccgttt
ctcttcgatcctgacatcatccttgtgaagaaaattaaacttttaagggacatatcaaca
atgatcgatgaatattcagacctggaacacatcaatgtttggccatgtaggctagagata
aagatttcttacgaaaatcttttggttttctacagagaacaccttagcagcatcgatttt
ataaacagagagcgattcaattattttattcaaagcggttggaagctattggaaaagaac
cacacacagttggtttgccgaatgtgtcaaagtatcagtcgcagttttgatcaactcccc
aaaacacagtcattggaactatcaaagctttgggctgatgcactggagaaggacggacac
atagaactggccatcaaaaaagcacaagaggcaaatgacaaagatttggtggcaagattg
aatgaagaactggaagatttaaaaagtgacagtgaaccagatgaggagtggatcaggggt
actttagcagaacacgttactcagtcactagaacaggccaaagaaagggaaaaattgcca
aaaaagaaaaggagaagtagaccaaaatggaaacataatgacgaacatcttgatcaatcc
accactgttcattctgtaattgctgatgtcaccagtcacattacaaattggaaagatgtt
actgaatttgatttgcccgtttataaaccaagaagaaaacgaaagccatgtcaattaaaa
agtcaacagcagaaacaagatcaacctctcttacggtcaaaggttgctagatcgattaac
aaaaaagcaccaagtactgaagataaattcgaccaactaccatctgaattaccagcggga
tacagttctggtgatgagtcttcttctgacgatgattttttttccatggacgaagatgag
caaaaacttttcgaaccactggatggcaaaacattttacgaagattcctgcaaagtttac
aacacacaggggcaatcacaaaatatcgacgattgcctgttgacaaacggtctagcttta
tccgacgagtgtgtatcgggaatgacattcaaagctaagagtatatacgacgaaatgcgt
agtccagatgaatgcatggatctgtgtaaaaaaaatcctgaaagatacagactgtgtaga
gtcgaaattttcaattcacataaagcagtttgtcgaaccgtaaatgataacattgaaatt
gaaatttcaggaagatcaaaatgcggaaaggtttttaatcaagacgaagttgtagttgaa
atatttgaatatagaaaaccgttacacaagacacaaagtcaatctgctgaagataataag
gtttacggaaaagtcattgggcaaatcaaaacaaatgaaaatcgtcctaaacatcccgtt
ctggtttgcactctggatcatttttgtatgtatcacatgaagccattatgcaaaactgtt
ccaaaaatacatatcctgagcaaaaaacgcgataaagagtctcaagttgaaatatatgaa
tatacaaaacaaacaaaaaaacttacttttgatcgattgaaaacaatagaccaatcaaaa
cgtggggagtacttatttctcgtgtgttttatctcatggaatgggatgtatcctctcgga
gcagtaattggtgtctttgatggaaagagggatattcaaacgtccatcaggcttgtttgt
cttcggaataacgtgtctgtattgtataaagaaaacacagtccgggaaacagaaaaacta
ttatcatcgcaaatgccagaccaaaatgatgaacaaaatagagaagattattcagatagt
ttaaatgtgtttactattgatgggaatgacacaaaagatttagatgatgcaattagcgtg
cagataatttcagaaaacgaatttgaagtaggtattcatatatctgacgtcggtagttgt
attaaaaaggatgaccctatcgatgtggaagcgaaagagaggtcaacaacatattatcca
ggtgaaggctgtccgccataccacatgcttcctgagcccataggaacggatatgtgtagt
ctacttcctggtcaaaaacgaaaggctttgtcaattttttataaaattgacattcttgga
aaaattttggattacaaaataaaacctactctcatcaagtcccgaacgcgcctcacctat
cgcaaagcccaagaaatattatcatcagagaatgataacatcgatctaaggaaagaacta
tgttatctacgagatatttctagaatatttcgatcagagcgcctgggaaacaaagttttt
tcttttccgttcgaaccattcaataccagcagcgaatcatattttcagtctcttgatgca
catcatatagtggaagaacttatgatccttgtaaacaaaacggttggacaagacttaatt
aaggcgtttccggattgcattccacttcgcgttcagcctgcgccatctgcatgcaaaatt
cgggaatggttacaacaatatcctgttattggccattttattctttcccttcagcaacaa
aatctaccaacaaataacaatttggcatttgaaaatgttcttgacggtcaaaattccaag
cagctacaaattcaaaaatacgtatggaagaaaatcgaatcagattttagaacagaagaa
tatcaaaatgttgaaagatggattggtactgatcagtttcatccacagcaagcaatggct
tatgactcttggatatcatttcaagaaacgtcatcatatcaatgttcaggagcgtctcat
gacaaaacccactattctttgggtatttatccgtacctccattttacatctccaattcgg
cgttatgctgatttgatagtaaacaggcttgttcatgccatgattgatgatgagaaatcg
ccttacaataagaaagagatggaaatgatttgtagaaaaatcaatagtcaatctcgagca
tttaaaaaacaatgtcgtcttctgcatttagcacgaaaacttcaaaaccaaccgataatg
tttcacagccttttgaattcaacaacagacaatgctatgtctttgtgctttccaggatta
aaagagttgtcaaaatcctctggtcaaattcaattcagttctctgaagttgaagtcaaaa
ccgtatttcgaagagagcaagaatacagatgtgttgttcaccttatcttgggtacaacgt
ttatattctccctacgcatatgcatcttttccagggggcacagtctctagaagagaacca
gtaaaattagatccccaccaaagagtcatttttctttctctcgaaaagtggaaaaaatta
ttggattatttggtcaatagaaacatcaaatttttagacatagacatatttgagaaagaa
actctcgtcaaatgtcgcgaatgtgtagggacacacactgatgtgacatctgaatcaaaa
gatggtatcataaaaaaattacaatcggagtttagtttgacatttagtaaaggtcaaata
atttcagtacagatggggtgtgaaaagaaaggagggttaccagtaccagaaattcaaatg
ttagaattaacgaacaacgtcaaatgttgtattcaacacatgtcagaccctgtgagatgt
tttgctgtatattcaaatgtacatgcaggcaacaggagaatgacatcgtcagaatatatt
caaagatggttaaagatattccgcatggaatccgcgacaaatgccgcaaaatcgacgtca
attattatcaatgacttgcgagtaaattttcaaaatggagagagatatgatggcagtttc
gtacttctaaaaacattctgcatggaaagagacatatatatagagtatgcttggaatgat
gaaaaaaaagatgacaaggaaagaattatttcatttcaaacagattttttatgcattcgt
tgtgacatggtcaaagaagttccatcaaaatccaaagctggatgtcccccaaacgaacga
tggatatggattggtcatggtgaaacgaaatgttttcagattggaaaagaaaatgaaaat
atcaaagttcattttaatttgcacaaagatgcttgtacgcccacagcttcaatgttcgat
cagtctgccatagacaaattgacttgtactgttgaaatacttccaatggcagatgctgac
aaacacatagaaaaggctcttgctggattggataaggctacaccacttgcaaggtcgata
gcccttaaagaaaaacgtcccagccttgacgaaacccactgcagattagctcgacaaata
ggctatgatgttaagagtaaagatatgcagcctaacaacgaaaaacaatcagaagctatc
aagaaggcccttgcgtctagattttcactcatccaaggtccgccaggaacagggaagact
cttactggcattaagcttataatactgtttaaccgaatcaatctcaagcaccgagaggaa
ggcggtgaccacaaacaagtcgtgtactgtggaccctcgaacaaatcggttgatctggta
gcaaaatggatgaaaacacatattcccgatatttgtccaaaaatagtaagaatgtatggg
aactcaatggaaaatatgatataccctataccaaaccgagaatacatcaatcagcgttct
tgtaaagacaatcgacctgattcggacttaaatgagatatcccttcataccttaatacga
aagaaaggaaagccatatgctgagaggctagcaatgtttgaaaagcaatttaaaaattca
cctgatgacattgcaacggaagatatacttaagtacaagaaggctataagtatggcaaca
caggaggaacttaaacagtacgacgtcatcttttgtacaactgctgctgcattaagtcca
aaatttttaagagccacggatggaaaaatatttcaactgatcattgacgaggcaggaatg
tgtactgaaccagaaactcttgcaccaatcatcgccacgaaagctgaccaagttgtcctg
atcggtgatcacaaacagcttcaaccaatcattttttgtccagaagcatcggatcttggt
ctttcgaaatcgctctttgagcgatatgctgacagtgccgtatttttagacacgcagtac
agaatgaacctgaagatttgcgagtttccatcgaagcagttttacaaaggacagcttaaa
actggtccagtcgggaagtggacggttaaaaaaccgttgcaaatttggcaacgtcctgat
gtccccctcctgttttgccatatagagggagaagaggaatgtctgccagtcaccacggag
gaaggaaatcaacagtcacggagcaaccgtgcagaagtcgatcatgtagtgaaagtgtac
gagtatttaatgtctcacgacaaaatggataaagacgatgttaaagtcatgtctcagtat
aacgcccagtgttttgcaataagggatgctctgaagaagaaaagatttatcaattccaag
gtcactacagcggtgtccagtcaaggtggagaatgggactacgttatttttagcgctgta
agatcacttccgaagtttaggatcgaatcaaaccgcaacaaaggctggtgcaagaaaaat
ctaggatttattacagacgcacatcagattaatgttgttttgactcgagcaaggaaggga
ataattatcatcggaaataaaaacttactacaatgcgacgaaaattgggaagcactcata
aaacactacaccagactggattgtgtggttaacgccgaagatcaaaacctcaccccactc
aaacgaccagggagaagacactga
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