Crassostrea angulata (Portugese oyster): 128165874
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Entry
128165874 CDS
T09348
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
canu
Crassostrea angulata (Portugese oyster)
Pathway
canu03013
Nucleocytoplasmic transport
canu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128165874
09122 Translation
03013 Nucleocytoplasmic transport
128165874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128165874
03041 Spliceosome [BR:
canu03041
]
128165874
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128165874
Spliceosome [BR:
canu03041
]
Complex C
Other components
EJC/TREX
128165874
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128165874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
128165874
NCBI-ProteinID:
XP_052686745
EnsemblRapid:
LOC128165874
LinkDB
All DBs
Position
10:complement(23047182..23056631)
Genome browser
AA seq
663 aa
AA seq
DB search
MAASMKFVFGNARDVFCRKLDSLENNHDWKEIFQSVCGSEAEKKLAVDQALRDSMKDVVM
RADDCEEYKKVILHSIEMAKEDLCSVIMPFVLLSDIFDLITLSQCEIVFYLVEEKLPVWK
TPLFYDSGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLSRLFPLSEKSALNLMSQFNLE
NVTVFSTKSEEVKPKSHDISDDVMEVEEGEMEDLTGSTPVDYNLYRRFWALQDYFRKPTQ
CYDKVPWKAFQQNADVVLNAFASAKLDDMKSSRRKLDLPRPADTRAFFAKYLTSEKLLDL
QLNDSNFRRYVLVQFLILFQYLNSQVKFKSASQNLSDEQNQWIKTIQDKVYQLIRETPPD
GEQFCKIVQHILAREEHWNKWKNDGCPDFARKPVAEDTKIKSRAKRRWVGDDLQAHGGKI
IKMGSAELTRLWNINPDNMEACKAEKRVFLPSLEDFFAEAMEQADPEAKVEEQYKMVNNP
VFQWKSLRLLARQSPHFFGQHHTPAMPLPQYLELMLNKIAQELPSTGSNGDVAPEGNNEE
MKTEVGDDEAIKESQEVEDEELKAQAEEAGREEIPEDILSKDQIELVAEKLGEDWKRLGT
ELNFPEDDMSYFETENNEQVACAKKMLTIWQENEGDRATAGTLKIALKEVGLTEVIDAVF
GST
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttccatgaagtttgtgttcggaaatgccagggatgtattttgtagaaaactt
gattctttggaaaacaaccatgattggaaagaaatattccagtcagtttgtggaagtgaa
gctgagaaaaaattggctgtagatcaggcattgcgagacagcatgaaggatgtagttatg
agggcggatgattgtgaagagtacaaaaaagtcatcttacattccatagaaatggcaaag
gaagatttgtgttctgtaatcatgccattcgtccttctgtctgatatatttgacttgatc
acattgagtcagtgtgaaattgtcttctacttagtggaggagaaactacctgtgtggaaa
acaccactgttttatgattctgggaaaaactatcttttgaggatgtgcaatgatctgctc
agaaggttgagcaagtcacagaatacagttttctgtgggagaattcagctgttcttgtca
agattgttcccgttgtcagaaaaatcagctttgaatctcatgagtcagtttaacctcgaa
aatgtcacagtgttttccacaaagtcagaggaagtcaagcccaaatctcatgatatttct
gatgatgtcatggaggttgaagaaggggaaatggaagatctcacagggtcaacaccagtt
gattacaacttgtacaggaggttttgggcacttcaggattactttagaaagcctacacag
tgttatgataaagtcccttggaaagcatttcagcagaatgctgatgtagtactgaatgcc
tttgccagtgcaaagctggatgacatgaaatcatcacgaaggaaactagatttacctcgg
ccagcagacacaagagcattctttgccaaatatttaaccagtgaaaagttgctggacctg
caattgaatgacagtaatttcagaagatatgtgctggttcagttcctcatccttttccaa
tatttaaattcacaagttaaattcaaaagtgccagtcaaaatctttctgatgaacagaat
cagtggatcaaaacaatacaggataaagtttaccagctaatcagagaaactcctcctgat
ggagagcagttctgtaagatagtgcagcatatcttagcaagagaagaacactggaataag
tggaaaaatgatgggtgcccagactttgcaagaaaacctgttgcagaagacacaaaaata
aagtctagagcaaaaagacgatgggtaggagatgatcttcaagcacatggagggaaaatt
atcaaaatgggcagtgcagagctcactagattatggaacatcaatccagataacatggaa
gcctgcaaagcagagaagagggtatttttaccctcattagaagatttctttgctgaagcc
atggagcaagctgatcctgaggctaaagttgaggaacagtacaaaatggtgaataatcct
gtattccaatggaagtcgcttcgacttctagcgagacaaagcccccatttctttggtcag
caccacactcctgccatgcctctccctcagtacttggaacttatgctaaacaagatagca
caagagttgccatccacaggctccaatggagatgtagcaccagagggaaacaatgaggaa
atgaagacagaggtgggagatgatgaggctattaaagagtcccaggaagtagaagatgaa
gaactcaaggctcaggcagaggaagcaggacgagaagaaataccagaggacattctgtca
aaggatcaaatagaacttgttgctgaaaagcttggtgaggactggaaaaggcttggcaca
gagttaaacttccctgaagatgacatgagctattttgagacagaaaacaatgaacaagta
gcttgtgcaaaaaagatgttgactatttggcaggaaaatgagggtgatagagcaacagct
ggtaccttaaagatagcactgaaggaagtggggctgaccgaagtgatagatgctgtgttt
ggatctacatga
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