Crassostrea angulata (Portugese oyster): 128178044
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Entry
128178044 CDS
T09348
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
canu
Crassostrea angulata (Portugese oyster)
Pathway
canu03013
Nucleocytoplasmic transport
canu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128178044
03015 mRNA surveillance pathway
128178044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128178044
Enzymes [BR:
canu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128178044
5.6.2.5 RNA 5'-3' helicase
128178044
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128178044
mRNA cycle factors
Common to processing body (P body) and stress granule
128178044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
Viral_helicase1
nSTAND3
AAA_16
ATPase
AAA_22
SRP54
PhoH
AAA_10
Motif
Other DBs
NCBI-GeneID:
128178044
NCBI-ProteinID:
XP_052700996
EnsemblRapid:
LOC128178044
LinkDB
All DBs
Position
3:18099673..18109283
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYAPNSQSLTFLEPEEDLIGADTQGTDYDYTDFTLPSQTQSQTQASQLEHGQSQSQ
VNGPEAPIQNGLDKGVVGIAQGVGELTFEEEEEEQFMMKDLPKHACSYCGIHDPASVVYC
NSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI
PAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQMRSRQI
SAQQINKLEELWKDNPDATLEDLEKPGVDEEPTQVLLRYDDAYQYQNIFGPLVKLEADYD
KKLKESQTQDNIVVRWDVGLNKKRIAFFHLPKANDEMKLMHGDELRLRYQGELHKPWSGV
GHVIKIPDNHSDEVAIELKSNAGVPSECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSV
WGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLVKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCEKELLQHADVICCTC
VGTGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPGDRVRKGLDI
PWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYE
GQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPR
KLVNTSNPGGRFMSNIMFDAREVLIPGSVYDRSRGYNEPVVRTHDQLSYIGPERQYTGPA
LNIPVPVNMFMPPMPQPFNGQPMPMGNRNAPTQRGTGRRRGQKPPRYSNTQSQQNSSQYS
QGNSQSQASQDVSQPFSQGPLTQGPMSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatatgccccaaattcccaatccttgactttcctcgaacctgaagag
gacctcattggggccgacactcaaggaactgattatgactacacagatttcaccctacca
tcccagacccagtcacagacccaggcatcccaacttgaacacggacaaagccaaagccag
gtgaatggtccagaagcccctatccagaatgggctggacaaaggtgttgtgggcattgcc
cagggggttggggagcttacttttgaagaggaggaagaagagcagtttatgatgaaagat
ctaccgaagcatgcctgctcatattgtggaatccatgacccagcatctgtggtgtattgc
aatagcaccaagaaatggttctgcaatggaagaggaaacacttctggaagtcatatcatc
aaccatcttgtacgagccaaggcaaaggaagtgaccctgcacaaagatggccccctggga
gagactgttttggagtgctataactgtggctgtagaaatgtgttcttgcttggattcatc
cctgccaaggcagactcagtggttgtactcctatgtcgccagccctgcgcaactcttacc
aacttgaaggatatgaactgggacccaagtcagtggcagccattgatacaggaccgtcag
tttctgtcatggctggtcaaagtgccctctgatcaggagcagatgaggagccgccagatc
tcggcccagcagatcaataaactagaggagctgtggaaagacaaccctgatgccacgctg
gaggatctagaaaagccaggggtggacgaggagccaacacaggtgttgctaagatatgac
gatgcttaccagtaccagaacatttttggacctctggtaaagttggaggcagattatgac
aagaagttgaaggaatcccaaacccaggacaacattgtagtgcgttgggatgttggactc
aataaaaaacggatagctttcttccacctcccaaaagccaatgatgagatgaagttaatg
catggggatgagttgaggcttcgttatcaaggcgagctgcacaaaccatggtctggtgtt
ggacatgtaataaagattccagacaaccatagtgatgaagtggccattgaactgaaaagt
aatgcaggagtgcctagcgagtgcactcataactttgtggtggattttgtatggaagtca
acatcctttgacaggatgcaggcagccttgaagaccttcgctgtggatgaaacatctgta
tggggatacatctaccacaaacttctgggacacgaggtggaggatgttgtcatcaagtgt
cagctccccaagagattcagtgtccctaacctcccggagctgaaccactcccaggtgtat
gctgtcaagacggtcctccagcggccactcagtctcattcagggtcctcctggaactggt
aagactgtgacatctgccaccattgtgtaccacttggtcaaacagaacaatggacaggtg
ttggtctgtgctccctctaacattgctgtggaccaacttactgagaagattcacaaaaca
ggactgaaggttgtacgtctgtgtgcaaagagcagagaagccattgattcaccagtgtct
ttcttggctcttcataatcagattagaaatatggaaagtgtgccagagttacagaaactg
cagcagctgaaggatgagacaggtgagctgtcgtccactgacgagaaacgatacaggtct
ctgaagaagcagtgtgagaaagaattgttgcagcatgctgacgttatctgttgtacctgt
gtgggaactggtgatcctaggttggccaagatgcagtttaggtctgtcctgattgatgag
agcacacaggccactgaaccagagtgtatgattccggtggtgctgggatgtagacagttg
atcctggtaggagaccactgtcagcttggccccgtggtgatgtgtaagaaggcagcccga
gcgggtctgtcccagtcgctttttgagcgcctggtagtgcttgggatcagacccatacgt
ctacaggtccagtacagaatgcaccctgctctcagtgctttcccatccaatatcttctat
gaaggatctctacaaaatggagttgcaccaggagaccgcgtaaggaaaggacttgacatt
ccctggcctcaaggagacaaacccatgttcttctatacaacatctggacaagaggaaata
tcaagttctggaacttcttatttgaataggactgaagcagctaacgtggagaagattgcc
acaagatttttgcgatccaacgtcaagcctgagcagataggtatcatcactccttatgaa
ggacagagagcctacattgtacagtacatgcagtacagtggatctctgaacaagaaactg
tatcaggagatagaagttgctagtgttgatgcttttcaagggagagagaaagattttatc
attctctcttgtgttcgttctaatgaacatcaaggaatcggttttctgaatgaccctaga
cgtctaaatgtggctttaactcgagcaaaatatggaataattattgttggaaatcccaag
gttttatcaaagcaacctctttggaaccaccttttaacttactacaaggagcagaagtgt
ctggtggagggacctttgaataatctgaaggagagcatgattcagttcagcaaaccccgc
aaacttgtcaacacgtcaaacccgggaggacgttttatgagcaacataatgtttgatgcc
agagaagttctgattccgggaagtgtgtatgacagaagtcgcggatacaacgagccagtg
gttcgcacccatgaccagctgagttatattggtccagagagacagtacacaggccctgcc
ctgaacatcccagtgcctgtcaatatgttcatgccccccatgccacagccattcaatgga
cagccaatgccaatgggtaacagaaatgcccctacccaaaggggtacgggacgtcgtcgt
ggacagaagcctccgcgctacagcaacacccagtcacagcagaacagttcccagtacagt
cagggcaacagtcagagccaggccagtcaggatgtatcccagccattctcccagggacca
ctgacccaggggcctatgtctatgagccagcccttccagatgagtcagccaggcttgtct
ggtctctcccagccagagctctctcaggacagtttcttggcggatgacttcaaatctcaa
gcagatggcatgctgtcccaggactccacctaccagggagaccgcatgttttatgcatca
cagttgtcacagggtccatttaattag
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integrated database retrieval system
