Crassostrea angulata (Portugese oyster): 128190152
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Entry
128190152 CDS
T09348
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
canu
Crassostrea angulata (Portugese oyster)
Pathway
canu03022
Basal transcription factors
canu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128190152
09124 Replication and repair
03420 Nucleotide excision repair
128190152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
canu03021
]
128190152
03400 DNA repair and recombination proteins [BR:
canu03400
]
128190152
Transcription machinery [BR:
canu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128190152
DNA repair and recombination proteins [BR:
canu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128190152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
DZR
Motif
Other DBs
NCBI-GeneID:
128190152
NCBI-ProteinID:
XP_052718026
EnsemblRapid:
LOC128190152
LinkDB
All DBs
Position
6:34702268..34712164
Genome browser
AA seq
399 aa
AA seq
DB search
MAEEEEKGYRWETEYERTWEAIQEDEKGSLQASVDDIISKAKKRKLLEKIKNVRLGMMRH
LFLIIDMSEAMSDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIIITKNKRAEKVSEL
GGNPRRHITTLQSLADKVCHGEPSLQNSLELAHQTLRHMPGHASREVLVVMGSLTTCDPD
NIISTISMLRDGNVRCSVIGLAAEVCVCKKLCKETHGSYSVILDECHFKDLLTQHVTPPP
ATASTESSLIRMGFPHHQLSADKEERPSMCMCHLDSKNSQGFSSTGYFCPQCKSKYCELP
IECKACGLTLVSAPHLARSYHHLFPLDQFREIPTAQVGSNVLCFSCQTAVQELNVYICDN
CEQIFCLDCDLFIHETLHSCPGCASSRQTQQSAKMAGFS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaagaagagaaaggatacagatgggaaacagaatatgaacgcacttgggaa
gcaattcaagaagatgaaaaagggtcgcttcaggccagtgttgatgatatcatcagcaaa
gctaagaagagaaaactcttggagaaaatcaagaatgttcggcttggtatgatgaggcac
ttattcctgattattgacatgtcagaagctatgagcgaccaggatctgaaacccactcgt
ctactttcaacactgaaacttttggaatactttgttgaagagtattttgatcaaaaccct
ataagtcaacttggtatcatcattacaaagaacaaaagggcagagaaagtctctgagctt
ggaggcaaccctaggagacatattacaactttacagagtcttgctgataaagtgtgtcat
ggtgaaccgtctctacagaattcattagaacttgcccaccaaactctcaggcacatgcca
gggcatgccagtagagaagttttagttgttatgggcagtttgacaacttgtgacccagat
aacatcatcagcaccatctctatgctgagggatggtaatgtcagatgctctgtcattggt
ctagcagctgaagtctgtgtctgtaaaaagctttgtaaagaaacacatggtagctacagt
gttatattggatgaatgccacttcaaagatctcctcactcaacacgtcaccccaccaccc
gccactgctagtacagaatcttcactcattagaatgggttttcctcatcatcagctgagt
gcagacaaggaggagagaccatccatgtgtatgtgtcacctggacagtaaaaacagccag
gggttcagtagtacaggctacttctgtccccagtgtaagagtaaatactgcgagctgccc
atcgagtgcaaggcctgcggcctgactctggtatcagcccctcatcttgctcgttcttat
catcacctcttcccactggatcagttccgggaaatacctacagctcaagtaggatccaat
gtattatgtttttcttgtcaaacagctgttcaagaactcaatgtatacatatgtgacaac
tgtgagcagattttttgtttggactgtgatctctttatacacgagactttacactcctgt
ccggggtgtgctagctcacgacagactcaacagtcagccaagatggctggcttctcttga
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