Caldilinea aerophila: CLDAP_21810
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Entry
CLDAP_21810 CDS
T01797
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cap
Caldilinea aerophila
Pathway
cap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLDAP_21810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cap03400
]
CLDAP_21810 (mfd)
Enzymes [BR:
cap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLDAP_21810 (mfd)
DNA repair and recombination proteins [BR:
cap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLDAP_21810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
RecG_dom3_C
ERCC3_RAD25_C
AAA_22
AAA_30
AAA_16
IstB_IS21
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAM00221
UniProt:
I0I4N3
LinkDB
All DBs
Position
complement(2722969..2726757)
Genome browser
AA seq
1262 aa
AA seq
DB search
MLLSGLLELLPRLPAFRAWLQTLTTPPAEPTPQAVLAAARPFLVAGARMHLAVPIVFITA
RSEMAQQIYNQLEIWLPPVDEGGPPIYLFAEPDALPYERIHWSSTTRQRRLTALAALQSR
HGPPPVIVASARALSQKTLPARELRLALRTIKVGTALRLDQMTSAWVQTGYSPVEIVEEP
GTFARRGGIVDIWPPNLSTPVRIDLFGDEVESLRLFDPATQRTIRNVESVEIGPGSEALS
KYGPLALERLGVHKGDLCEPENLGLGQEASPLLDPGLLLAIREEIRLEIEHLANSRSFHG
IEWYLPYFYSPAVSLLEHLPPDALLIVDDALDLIATLRELDAQAESLHAELVQAGETPRS
FARSTFTAEEMQAKLIERKPALLGYGDLYGKTAGANTPLARAFAPAPRFGGKVKEIATDL
VKLHNAGHAVVLATRQAARISQVIEEVHLSGRVQQEVNSAPPPRSTILVQGILGEGFIMK
GIETGEESPLSFNLHLLTDTELFGWSKPQARARPKPHSKVAPELFFADVKPGDYVVHIEH
GIGRFEGLTRMTIGGVEREYLLVSYAREDKLYVPVHQADRLSRYIGASDAPPVINRLGTA
DWQIVKERARRAVAEIADDLLKLYAERELVIRDPYSPDSPWQEEMEAAFPYQETEDQLMA
VEAVKRDMESERPMDRLICGDVGYGKTEVAIRAAFKAINDGKQVAFLAPTTVLAQQHYRT
ISNRLARFPVRVEMLSRFRTPAQQQKVLEGLRTGAVDIVVGTHRLLSQDVEFKDLGLLII
DEEQRFGVAQKEQIKQLRTQIDVLTLSATPIPRTLHMSLSGIRDMSTINTPPKERQPIHT
VLAEYDDVLVKQAIQRELNRKGQVFVVNDRVRDIYRLAERIQRLVPEAVVAVGHGQMPER
ELEEVMMRFAEGEIDVLVATTIIENGLDIPNANTIIINRADHFGLAQLYQLRGRVGRSTR
RGHCYLLYEKHKVLSYDARRRLEAILESSEELGAGFRIAMRDLEIRGAGDILGARQSGHI
DSIGFDLYTRLLAQAINEARRKKERFEKAMTDCKAAQSLEGSEMELQSDEAAPLSPAPTS
SHPPTTVADDLPFDLEDPLQPPVQLDLPLDARIPAHYVEEEALRLQLYRRIAGLTRPEAL
DEMRRELIDRFGVDPETGSVPEEVDNLFFQVRIKTLAARAGVTRIGRDMDNLVLYSDALE
NMDRRALERRLRLALGRIAEEDERFIPEEAARVGRRAIYLPIDEAGQWRQALLRTLEIMA
VG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgctcctttctggcttgcttgaacttttgccgcggctgcccgcctttcgagcgtggctg
cagacgctgacgacgccgcccgctgaaccgacgcctcaggcggtgctcgccgctgcccgg
ccctttcttgttgccggtgcgcgcatgcatctcgctgtcccgatcgttttcatcacggcg
cgcagcgagatggcgcagcaaatctacaaccaactggaaatctggctgccgcccgttgac
gagggcggcccacccatttacctttttgccgaacccgatgcgctgccctacgagcgcatc
cactggagcagcaccacgcggcagcgtcggttgacggcgctggcagctttgcaaagtcgc
catggccctccgccggtgatcgtcgccagcgcgcgggcgctgagccagaaaacgctgcct
gcccgcgagctgcgcctcgccctgcgcacgatcaaagtgggcactgcactgcgtctggat
caaatgaccagcgcctgggtgcagaccggttattcacctgtcgagattgtagaagagccg
ggaaccttcgcccgtcgcggaggcatcgtcgatatctggccgcctaacttatcgacaccg
gtacgcatcgacctctttggcgatgaagtagaaagcctgcgcctcttcgaccctgccacc
cagcgcacgatccgcaatgttgagtcggttgagatcgggccgggaagcgaggcgctcagc
aaatatggtccgcttgcgctggagcgcctgggcgtgcacaagggcgacctgtgcgagccg
gaaaaccttggtctggggcaggaggccagccccttgctcgaccctggactgttgctagcg
atccgcgaagagattcgcctcgaaatcgaacatctcgccaatagccgcagcttccacggc
atcgaatggtatctgccctacttctacagtccggccgtctctctgttagagcatctgccg
ccagacgccctcctgatcgtcgatgatgcgctcgacctgatcgctaccctgcgcgagctg
gacgcccaggccgaaagtctacacgccgaactggtgcaggcaggtgagaccccgcgctcc
tttgcgcgcagcaccttcaccgccgaggagatgcaggcaaagctgatcgagcgcaagcct
gccctgctcggctacggcgatctgtacggcaaaacagccggcgccaacactcctctggca
cgcgcctttgctcctgccccccgtttcggcgggaaggtcaaagagattgccaccgatctg
gtcaagctgcataacgccggtcacgccgttgtgcttgccacccgccaggctgcacgcatc
agccaggtcattgaggaggtccatctcagcggccgcgtccagcaagaagtgaacagtgcg
cccccgccgcgcagcaccatcctggtgcagggcatcctcggcgagggcttcatcatgaag
gggattgaaacaggcgaagagagccctctttcattcaaccttcacctgctcacggacacg
gagctgtttggctggagcaagccccaggctcgcgctcgccccaaacctcacagcaaagtg
gcgccggagctcttctttgccgatgtgaagccaggcgactacgtcgtccatatcgaacac
ggcatcgggcgctttgagggattgacgcgcatgacgataggtggcgtcgaacgtgagtat
ctgctcgtcagctacgcgcgcgaagacaagctctacgtgccggtgcaccaggctgaccgc
ctgagccgctacattggcgccagtgacgcaccgccggtcatcaaccggctgggaacggcg
gattggcagatcgtcaaggagcgtgcccgccgcgccgttgccgagatcgccgacgacctg
ctcaaactgtacgccgagcgagagctggtgattcgcgatccctatagcccggacagcccc
tggcaagaagaaatggaggccgcctttccctatcaggaaaccgaagaccagctcatggcg
gtagaggctgtcaaacgcgacatggaatcggagcgaccgatggaccggctgatctgcggc
gatgtcggctacggcaagacagaggttgccattcgggctgcgtttaaggcgatcaacgat
ggcaagcaagttgcctttctggcgccgacaacggtgcttgctcagcaacactatcgcacc
atcagcaatcgtctggcgcgctttccggtgcgcgtcgagatgctgagccgcttccgcacg
ccagcacaacagcagaaagtgcttgaagggctgcgcaccggcgcagtcgatattgtcgtc
ggcacacaccgcctgctcagccaggacgtcgaattcaaagacctgggtctgctcatcatc
gatgaagaacagcgcttcggcgtggcacaaaaggagcagatcaaacaactgcgcacccaa
atcgatgtactgacgctcagcgccacgccgatcccgcgcacgttgcatatgagcctgagc
ggcattcgagacatgagcaccatcaacacgccgcccaaggagcgccaacccatccacacc
gtgctcgccgaatacgacgacgtcctggtcaagcaggcaatccagcgtgagctgaaccgg
aaagggcaggttttcgtcgtcaacgatcgcgtgcgcgacatctatcgtctggcggaacgc
attcagcggctcgtgccagaggctgttgtcgccgtcggtcacggacagatgcccgagcgg
gagctggaggaggtgatgatgcgcttcgccgaaggcgagatcgacgtgctggttgccacc
acgatcattgaaaatgggctggatattcccaacgccaacacgatcatcatcaaccgcgcc
gatcacttcgggttggcgcagctttatcaactgcgtgggcgtgtggggcgcagcacacgg
cgcggacattgttatctgctttatgaaaagcataaggtgctcagctacgatgctcgccgc
cggctggaggcgatcctggagagcagcgaagagttaggcgcaggcttccgcatcgccatg
cgtgacctggagatccgcggcgcgggcgacatcctgggcgctcggcaaagcgggcacatc
gacagcatcggctttgatctgtacacgcgcctgctggcacaggcgatcaacgaggcgcgg
cgcaagaaggaacgcttcgagaaggcaatgaccgattgcaaagcggcccaatccctggag
ggtagtgaaatggagttgcagagcgatgaggccgcgcccctttctcctgctcccacctcc
tctcaccctcccaccaccgtggctgacgatcttccctttgacctggaagatccgctacag
ccgcccgtgcagctcgacctgccgctcgacgcgcgcattcctgcgcactacgtcgaagag
gaagcactgcggcttcagctttaccgccgcatcgccggccttacgcggcccgaagcgctg
gatgagatgcgccgcgagctgatcgaccgcttcggtgtcgatccggagaccggctccgtg
cccgaagaagtggacaacctgttcttccaggtacgcatcaagacgctggccgcacgcgca
ggcgtcacccgcatcggacgcgacatggacaacctcgtgttgtacagcgatgcgttagaa
aatatggaccgccgggcactggaacggcgattgcgtctggcgttgggccgcattgccgaa
gaggacgagcgcttcatcccagaagaggcggcgcgcgtcggccgtcgcgccatctatctt
cccatcgacgaggccggacaatggcgacaggcgctgctgcgcacgctggaaatcatggcg
gtgggataa
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integrated database retrieval system
