Capnocytophaga sp. FDAARGOS_737: FOC45_03730
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Entry
FOC45_03730 CDS
T06329
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Pathway
capf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOC45_03730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capf03400
]
FOC45_03730 (mfd)
Enzymes [BR:
capf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOC45_03730 (mfd)
DNA repair and recombination proteins [BR:
capf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOC45_03730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF5049
UB2H
PepQ_N
E2F_CC-MB
Motif
Other DBs
NCBI-ProteinID:
QGS17414
UniProt:
A0A6B8TF12
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All DBs
Position
867750..871064
Genome browser
AA seq
1104 aa
AA seq
DB search
MKELLQSLAQSSLYKSLLAKVQAQNSTTVGGLAGASLSAVVANLYTHTHRPLLVLLPDKE
ESAYVLNDLETLVGEQRVLFFPDSYRRPYQIEDTDNANVLLRAEVLHQLSHSTKPLIVVS
YPEALFEKVITRKQLEQNTLKITKGDSLTLEFLNEVLFSYQFNRTDFVTEPGEFSVRGGI
VDIFSFSNNEPYRIEFFGNEVESIRTFDVESQLSTAQLSQIIIIPNVENKESDEVRQSFL
EYISPQTLFIAKDIASLGQKIDKLFAKATDIYQKLANEVKRTAPEELYCQTEDLLAQANR
LQSIHIGISQPELTFLTTPQPSFNRQFELLIAYLNEKHAEGYQNYILCGTEQQAKRFHDI
FEEMEQKVAYQTVQLSLHAGFVDNELKINVFTDHQIFERYYKFQLKNGYAKKQAITLKEL
MQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLIYGDRDVLFVSIHALHKITKYNG
KDGKPPKIYKLGSGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGYAFAHDSYMQNELE
ASFLYEDTPDQSKATAEVKADMESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAV
LVPTTVLAFQHYQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIV
GEKVQYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS
VINTPPPNRYPIDSQVIPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP
DARIAIGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAHNFGLS
DLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG
AGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSELYRTAEEDKTYLTDTQIDTDF
ELLFPDTYVNRVAERLNLYNELSNLTNEEALQVYQRNLIDRFGKLPPQAIDLLNSVRVKW
LATRMGIEKLVMKNGKMTGYFIADQNSPFYQSARFQKLLLFVQRYPNQCRMQEKETRNGL
RLLILFDGINTVYQALKVLQQIEA
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagttattacaaagtctggctcagagtagcctttataaatccttgcttgccaaa
gtgcaggcgcagaatagcactactgtagggggcttggcaggtgcctcgctgtcggcagtg
gtggcaaacctatacacccatacgcatcgcccgctgttagtcttgttgcccgacaaagag
gaaagtgcctatgtgctcaacgatttagaaactttagtaggcgagcagcgggtgcttttc
ttccccgatagctatcgccgcccttatcagatagaagataccgataatgccaacgtgcta
ctgcgcgctgaggtgttgcaccaactaagccacagcactaaaccgctgatagtagtatca
taccctgaagcccttttcgagaaagttattacccgcaaacagttagaacagaatacccta
aaaattaccaaaggcgattcgcttacccttgagttcctcaacgaggtactttttagctat
cagttcaaccgcactgacttcgttaccgaaccgggtgagttttcggtacgtggggggata
gtcgatattttttcattttctaataacgaaccctatcgtatagagttttttggcaatgaa
gtagagagtattcgcacgtttgatgtagaaagccagctatctactgcacaactttcgcag
ataatcatcattcctaacgtagaaaataaggaaagtgatgaggtgcgacagtcgttttta
gaatatattagtccgcaaacgctctttatagctaaagatatagcctctttaggacagaaa
atagataaactcttcgcaaaagctaccgatatttatcagaaattagccaatgaggtgaag
cgtactgccccagaggaactctattgccagacagaagaccttttggcgcaagctaaccga
ttgcagtccattcacatagggatttcacagcctgaactcactttcctcaccactccacaa
ccctcgtttaataggcaattcgagctgctcatcgcttacctcaatgagaagcacgccgag
ggctatcagaactatatattgtgcggcacagagcagcaggcaaagcgttttcacgatata
ttcgaagagatggagcagaaagtagcttaccaaacggtacagctatcgttgcacgctggt
tttgtagataacgaactgaaaataaacgtttttactgaccaccaaatattcgagcgctac
tataaatttcagctaaaaaacggttatgctaaaaagcaagcgataaccctcaaagagctg
atgcagctggaggtaggcgactatgttacccatatcgaccatggtataggcaagttcgct
ggcttgcaaaagatagaagtagagggcaagcagcaagaggccatcaagctgatttatggc
gaccgcgatgtgctatttgtcagcattcacgccttgcacaagataaccaaatacaacggc
aaagacggcaaaccgcccaaaatatacaaattggggtcaggagcgtggaaagccctcaaa
cagaagactaaagcaagggtaaaagagattgctttcaaccttattcagctatacgccaaa
cgcaaagaggcacaaggctatgcttttgcacacgacagctatatgcagaacgagctcgaa
gcctcattcctctacgaagatacccccgaccaaagcaaggctactgccgaagtaaaagcc
gatatggagagtgccaaacctatggataggttagtctgcggcgatgtgggctttggcaag
accgaagtggctatcagggcagcctttaaggcagttgataacggcaagcaggtagccgta
ttagtgcctactacggtattggcttttcagcactaccagacttttagtcagcgtatgaaa
gattttccggtgcgcatcgattatctgaatcgttttcgcacggctaaagagaagaaaatc
attttggaagaactcgccaaaggacaactcgacattgttatcggtacgcaccaaatagtg
ggcgaaaaggtacaatataaagacttgggactgctgatagtagatgaggaacagaagttt
ggggtaggggtgaaagacaagctcaaaaccctaaaagaaaacctcgatgtgctgaccctt
acggctacccctataccgcgaaccttgcagtttagccttatggcggcacgcgacctttcg
gttatcaatacgccaccgcctaaccgctatcctattgattcgcaagtgataccttttagc
gaagaggtgatacgcgatggcattcgctacgaaatacaacgcggcggacaggtgtttttt
atgcacaaccgcgtagagaacattcaggaagttgccggtatgatacagcgtttgctaccc
gatgcccgcatagctatagggcacggacagatggacggtaagaagctggaagagacgatg
ctcgcctttatggagggggcatatgatgtgctggtggctaccactattattgagagtgga
ttagatgtgccgaatgctaacactatttttatcaataacgctcataattttggcttgtca
gacctgcaccaaatgcgtggtagggtagggcgtagcaataaaaaagcgttttgctacttc
atcacccctccactgatagcgatgagcgatgatgcccgcaagcgtatagaggcaatagct
cagttctccgacttgggtagcggacttaacattgcaatgaaagacttagaaatcagaggg
gcaggcgacctacttggcggtgaacaaagtggttttattaacgagatagggtttgatacc
taccaaaaaatattgcaagaagccataacagagcttaaagaaaacgagttttcagaacta
tatcgcactgccgaggaagacaaaacttacctcactgatactcaaatagacaccgatttt
gaactactcttccccgacacctatgtcaatagagtagccgaacgactcaacctttataac
gaactgagcaatctgaccaatgaggaagccttacaggtgtatcagcgcaaccttatcgat
cgttttggcaagttgccccctcaggctatcgacctgctgaacagcgtacgcgtaaaatgg
ctggcaacccgtatggggatagagaagctcgtgatgaaaaacggaaagatgacaggttat
tttatagccgaccaaaatagtccgttctaccaaagtgcgcgcttccaaaaattgcttctt
ttcgtacagcgataccctaaccaatgccgtatgcaagagaaagaaacccgtaatgggctg
cgcttactaatactctttgacggtattaatactgtgtatcaagccctaaaagtgctacaa
caaatagaagcgtaa
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