Capnocytophaga endodontalis: CBG49_08635
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Entry
CBG49_08635 CDS
T04940
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBG49_08635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capn03400
]
CBG49_08635 (mfd)
Enzymes [BR:
capn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBG49_08635 (mfd)
DNA repair and recombination proteins [BR:
capn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBG49_08635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ASF43137
UniProt:
A0A1Z4BPD1
LinkDB
All DBs
Position
complement(1933633..1936965)
Genome browser
AA seq
1110 aa
AA seq
DB search
MKSFLQQFTENSTYQSLLKHLQTKENTEVTGLAGASLSIVIANLFNTVHRPLLVLLPDKE
ESAYILNDLETLVGEQQVLFFPDSYRRPYQIEDTDNANVLLRAEVLNQLSHSTKPLIIVS
YPEALFEKVITRKQLEKNTLKIQKGDSLTIDFLNEVLFSYHFNRTDFVTEPGEFSVRGGI
VDVFSFSNNEPYRIEFFGNEVDSIRTFDVESQLSTAQLSKITIIPNVENKESDEIRQSFL
EYISEQTLFIGKDMGFFDAKIEKLFAKATDIYQKLPNEVKRTPPEELYCQAMDLLKQIQR
FQQVNINATTPTSKNEKEFSFHTTPQPSFNKQFELLISYFNNKHEEGFQNYILCGSEQQA
KRFQDIFEEMEQKVPYQTVQLSLHAGFVDTELKCNVFTDHQIFERYYKFQLKNGYAKKQA
ITLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLIYGDRDVLFVSIHALHK
ITKYNGKDGKPPKIYKLGSGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGFAFAHDSY
MQNELEASFLYEDTPDQSKATAEVKADMESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDN
GKQVAVLVPTTVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIII
GTHQIVGEKVTYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM
AARDLSVINTPPPNRYPIDSQVVPFNEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM
IQRLLPDARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNA
HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK
DLEIRGAGDLLGGEQSGFINEIGFDTYQNILQEAITELKENEFSELYHTAEEDKTYLTDT
QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEEALQVYERNLIDRFGKLPPQAIDLLN
SVRVKWLATRMGIEKLVMKNGRMTGYFIADQNSPFYQSARFQKLLLFVQRYPDKCRMQEK
ETRNGLRLLLIFENINSVYQALKVMQMIEA
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcattcctacaacaatttactgaaaacagcacctatcaatccctattaaaacac
ctacaaacaaaagaaaatacagaagttacgggattggcaggggcttctttgtcaatagta
atagctaacttgttcaatacagttcatagacctctattagtactgctacccgataaagaa
gaaagtgcctacatactcaatgatttagaaaccttggtaggagaacagcaggtacttttc
tttcccgatagctatcgtcgcccctatcaaattgaagacaccgataatgccaatgtgtta
ttgcgtgcagaagtcctcaaccaattgagtcatagtacaaaaccattgatcatagtctcc
taccccgaagctctttttgagaaggtcatcacacgaaagcaattagaaaaaaatacgcta
aaaattcaaaaaggagactcactcactattgatttcctcaatgaggtgcttttcagctac
cacttcaaccgcactgattttgttaccgaacctggtgagttctcagtacgtggtgggatt
gtagatgtattttctttttcaaataatgaaccttatcgcattgaattctttggaaatgaa
gttgatagcatccgtacattcgatgtagaaagtcagctatctactgctcaactatctaaa
attacaattatccctaatgtagaaaacaaagaaagtgatgagatacgacagtcattcttg
gagtatatcagtgagcaaacattattcattggtaaggatatgggattttttgatgctaag
attgagaaactctttgctaaagctaccgatatttatcaaaagctccccaatgaagtaaaa
cgcacccccccagaggaactctattgtcaagcaatggatttattaaaacaaatccagaga
tttcaacaagtaaacatcaatgctacaactcccacttctaaaaacgaaaaggagttctct
tttcataccaccccacaaccttcttttaacaaacagtttgaactccttattagttacttc
aacaacaaacacgaggaaggatttcaaaactatatcctctgtgggagtgaacaacaagcc
aagcgatttcaagatatttttgaagaaatggagcaaaaagtaccttaccaaacggtacaa
ttatcactacacgctggctttgtagatactgaattaaaatgcaatgtattcaccgatcat
caaatctttgagcgctattataaatttcagctaaagaatggttatgccaaaaaacaagcc
attacacttaaagaactgatgcaattagaggtaggcgattatgttacacatatagaccac
ggtattgggaagttcgctggcttacaaaagattgaagtagaaggcaaacaacaagaagct
atcaaactgatttatggagaccgtgatgtattattcgttagcattcacgcactacataag
attactaaatataacggaaaagacggcaaacctcctaagatttataaattaggttcagga
gcgtggaaagccctcaaacagaaaaccaaagctcgtgtaaaagaaatcgcgttcaacctc
attcagttatatgccaaacgaaaggaagcccaaggatttgcctttgctcacgacagttat
atgcaaaacgagttggaagcctcattcttgtatgaggatactcccgaccaaagtaaggct
actgccgaagtaaaagctgatatggaaagctctaaacctatggatagattggtgtgtggt
gatgtaggtttcgggaaaaccgaagtagccattcgcgctgccttcaaagctgtcgataat
ggcaagcaagtagctgtacttgtgcctactacagtactggcttttcaacactttcaaaca
tttagccagcgtatgaaagactttcctgtgcgcatcgattatctcaaccgattccgcaca
gccaaggaaaagaaaatcatcttagaagaactagctaaaggtcagttagatattatcatc
ggcacacatcaaatagtaggcgaaaaggttacttataaagatttaggattactgattgtt
gatgaagagcaaaagtttggcgtaggtgtaaaagataagctcaaaacccttaaagaaaac
ctcgatgtacttacgctcactgctacacctatcccacgcacactacaattcagtttgatg
gctgcccgcgacctttcggttatcaatacccctcctcctaaccgctaccctattgattcg
caagtagtacctttcaatgaagaggtaatacgcgatggcatccgttatgaaattcagcgt
ggcggacaagtattctttatgcacaatagggttgaaaatattcaagaggtggctggaatg
attcagcgattgctccccgatgcgcgtatcgccattggtcacggacaaatggacggaaag
aaattagaagagactatgcttgcctttatggaaggtaggtatgatgtattggttgctacc
accattattgaaagtggtttagatgttcctaatgccaatactatttttatcaacaatgca
cataattttggcttatccgatttacaccaaatgcgcggtcgcgtaggtagaagtaataaa
aaggctttttgctacttcatcacgcctcctctgatagcgatgagcgacgatgcccgcaag
cgtattgaagcgatagctcagttctccgatttaggaagcggactcaatatcgctatgaaa
gatttagagattagaggggctggcgacctcttggggggagagcaaagtggttttatcaat
gaaataggctttgacacctatcaaaatatactacaagaagccataacagaactcaaagaa
aatgagttctctgaactgtaccacaccgccgaagaagacaaaacttacctcaccgatact
caaatagatactgactttgaactactcttccctgatacttatgtcaatagagtagccgaa
cgactcaatctttataacgaactgagtaatctgcctaatgaggaagccttacaagtttat
gaacgcaacctcatcgaccgttttggcaagttaccccctcaagctatcgacttgctcaat
agcgtacgtgtaaaatggttggctacccgtatgggaattgagaaactcgtaatgaaaaac
ggaaggatgactggctatttcattgccgaccaaaatagtccgttctatcaaagtgcgcgc
ttccaaaagctattgctctttgtacaacgctaccccgataagtgtcgtatgcaagagaaa
gaaacccgcaacggcttgcgtttattgcttatttttgaaaacatcaacagtgtataccaa
gctctaaaagttatgcaaatgatagaagcataa
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