Capnocytophaga sp. oral taxon 902: HW278_12020
Help
Entry
HW278_12020 CDS
T08773
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
capo
Capnocytophaga sp. oral taxon 902
Pathway
capo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
capo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HW278_12020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capo03400
]
HW278_12020 (mfd)
Enzymes [BR:
capo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW278_12020 (mfd)
DNA repair and recombination proteins [BR:
capo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HW278_12020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
L_protein_N
Motif
Other DBs
NCBI-ProteinID:
QLF51365
UniProt:
A0A7H8YV89
LinkDB
All DBs
Position
complement(2792265..2795594)
Genome browser
AA seq
1109 aa
AA seq
DB search
MKELLQLFAENSTYKSLLTEIKAHHNIVANGLAGASLSLLIANVYTNTKRPLLVLLPDKE
ESAYLLNDLETLVGEQVLFFPDSYRRPYQIEDTDNANVLLRAEVLNRLSNSGQPLIVVSY
PEALFEKVITRKQLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIV
DVFSFSNNEPYRIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLE
YISEQTLLISKETSTFGAKIDKLFTKATDIYEKLPNEVKHSTPDVLYCQSEDLLNQMGRF
QQININLPSSFSKGEKEIVFRTTPQPSFNKQFELLISYLNDKHTEGYQNYILCGSEQQAK
RFHDIFEEMEQKVHYQTLLFSLHAGFIDNEHKLNVFTDHQIFERYYKFQLKNGYAKKQAI
TLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLIYGDRDVLFVSIHALHKI
TKYNGKDGKPPKIYKLGSGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYM
QNELEASFLYEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG
KQVAVLVPTTVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIG
THQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMA
ARDLSVINTPPPNRYPIDSQVVPFNEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMI
QRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAH
NFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKD
LEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQ
IDTNFELLFPDTYVNRVAERLNLYNELSNLPNEEALQQYQRNLTDRFGKIPPQAIDLLNS
VRVKWIATRMGIEKLVMKNGKMTGYFISDQNSPFYQSERFQKVLLFVQRYPNKCRMQEKE
TRNGLRLLLIFEGINTVYQALKVMQLLDA
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagttattacaattatttgcagaaaatagtacttataaaagtttattaactgaa
attaaagcacatcataatatcgttgccaatggtttggcaggggcttctctgtccttactc
atagctaatgtttatactaataccaagcgtccgctattggtactcttgcccgacaaagaa
gaaagtgcctatttgttaaacgacttagagaccttagtaggcgaacaagtactcttcttt
cctgatagctatcgccgcccgtatcaaattgaagataccgataacgccaacgtgttactg
cgtgctgaagtgctcaatcggctgagcaatagtgggcaaccactgatagtagtctcctac
cccgaagcgctcttcgagaaagttatcactcgtaagcaattggagcaaaataccttaaag
attagcaaaggagaccaactaaccattgaactcttgaacgaagtgcttttctcctataat
ttcaatcgcactgattttgtaaccgaacctggcgaattttcagtacgcggagggattgtt
gatgttttttctttctcaaataacgaaccttaccgcattgaattctttggcaatgaagta
gagagtattcgcaccttcgatgtcgaaacacagctctcaacaacacagctttctaagatt
accattatccctaacgtcgaaaacaaagaaggtaatgaggtacgtcaatcatttttagag
tatatcagcgaacaaacccttttaatatctaaggaaacatctacttttggagcaaaaatc
gacaagctcttcactaaagctactgacatttacgaaaagctccctaatgaagtaaaacac
agtacacccgatgtgctatattgtcaatcagaagatttattaaaccaaatggggagattt
cagcaaataaatataaatcttccctcatctttctccaaaggcgaaaaagagattgttttc
cgcactacaccacagccctcattcaacaagcaattcgagctacttatcagttatttaaac
gataaacacactgagggataccaaaactatatcctctgtggtagtgagcaacaagccaaa
cgcttccacgacatctttgaggagatggaacaaaaagtgcattaccaaacactattgttt
tctctacacgcaggctttatagataatgagcacaagctgaatgtctttactgaccatcaa
atatttgagcgttactacaaattccagctaaagaacggttatgccaaaaaacaagctatt
acgctcaaagagttaatgcaattagaagtaggcgactatgtaacccatatcgaccacggt
attggcaagtttgctggattacagaagattgaagtagaaggcaagcaacaagaggctatc
aaactgatttacggcgaccgcgatgtcctattcgtaagcattcacgccctacataaaatc
actaaatacaacggtaaggacggcaagccacccaagatatacaaattaggctctggagcc
tggaaggcactgaagcagaagacaaaaacaagagtgaaggaaatagccttcaacttgatt
cagttgtatgctaaacgcaaggaatctaaagggtatgcatactctcacgacagctatatg
cagaacgaactggaagcctctttcctatatgaagatacacccgaccaaagcaaagctaca
gccgaagtaaaagctgatatggagagcccaaaacctatggacaggttggtgtgtggtgat
gttgggtttggaaaaaccgaagtagctattcgtgctgctttcaaagcggtagacaacggc
aagcaggtagcggtattagtacctactacggtactcgcttttcagcactttcaaaccttt
agtcagcgtatgaaagacttccctgtgcgcattgattatcttaaccgattccgcacagct
aaagaaaagaaaatcatcttagaagaactggcaaatggtcagttagatattatcatcgga
actcatcagatagtaggcgaaaaagttgcttataaagatttaggtctactgatagtagat
gaagagcaaaagtttggtgtaggcgtgaaggataagctcaaaaccctcaaagaaaacctc
gatgtgctcaccctcactgctacacctatcccccgaaccttacagttcagcttaatggca
gcccgcgacctatcagtaatcaatacaccaccccctaaccgctaccctatcgattctcag
gtagtacctttcaacgaagagataatacgcgatggcattcgttatgaaattcagcgaggc
ggacaagtgttctttatgcacaaccgtgtagagaatattcaggaagtagcaggtatgatt
caacgcctattacccgatgcgcgtatagccattggtcacggacaaatggacggaaaaaaa
ttagaagaaacaatgttagcctttatggatggtgcttacgatgtattggtagctactact
atcattgaaaatggtttagatgtacccaatgctaataccatcttcatcaataatgcacat
aattttggcttatccgatttacaccaaatgcgtggtcgcgtagggagaagcaacaaaaaa
gctttctgttactttatcacgcctcccctcgttgcaatgagtgatgatgcccgcaagcgt
attgaagctatagctcagttctctgatttgggaagcgggttaaatattgctatgaaggat
ttagaaattcgtggagctggagacctcttaggcggggaacaaagtggatttatcaatgag
ttaggcttcgaaacttatcagaaaatattgcaagaagctatagtagagctcaaagaaaat
gagttctcagaactatatcacactgccgaagaagataaaacttacctcaccgatactcaa
atagacaccaattttgaattgctctttcctgatacctatgtcaatagagtggcagaacga
ctcaatctttataacgaactgagtaatttacccaatgaggaagctttacagcagtaccaa
cgcaatcttaccgaccgttttggcaaaattcctccccaagctatcgacttgctcaacagc
gtgcgagtgaaatggatagctactcgtatgggaattgaaaagctcgtgatgaaaaacggt
aagatgacaggctattttatctccgaccaaaacagtccattttaccaaagtgagcgtttt
caaaaggtgctactctttgtacaacgttaccctaacaagtgtcgtatgcaagagaaagaa
acccgtaacgggttgcgtttgctccttatttttgaaggaatcaatactgtgtatcaagcc
ttaaaagtaatgcagttattagatgcatag
DBGET
integrated database retrieval system
