Caproiciproducens sp. NJN-50: EQM14_03430
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Entry
EQM14_03430 CDS
T05807
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
capr
Caproiciproducens sp. NJN-50
Pathway
capr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
capr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EQM14_03430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capr03400
]
EQM14_03430 (ligD)
Enzymes [BR:
capr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EQM14_03430 (ligD)
DNA repair and recombination proteins [BR:
capr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EQM14_03430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Dsc3_C
Motif
Other DBs
NCBI-ProteinID:
QAT51211
UniProt:
A0A410Q7C6
LinkDB
All DBs
Position
complement(693146..695593)
Genome browser
AA seq
815 aa
AA seq
DB search
MSPGLNEYNRKRNFENTEEPEGREEKSENRLRFVVQHHIARRDHFDFRLEWNGSLLSWAV
PKGPSLDTRDKRLAVRVEDHPLDYRNFEGTIPKGEYGGGVVMLWDEGFWEPFTEVDQGLR
QGSLKFILKGRRLRGNWALVRMKAKAGEEAKNWLLLKERDDYAKAGDSIAEFTTSVRTGR
TMEEIEAGADEKITRNPFDRTGIQLAKLAAAVPDGSGWLYELKYDGYRILSFLEGGGARL
ITRNGNDYAERFQDVADSLTGWAAGRSMVLDGEMVVTDAQGRTDFQALQNYMRNPVGKNL
AYIVFDLLALNGEDLRGRPLIDRKETLEALMKGAPGNLCYSQHVVGKGVESFSAACQANL
EGIVGKKADSVYSGTRNGDWIKLKCGKRQEFVIGGYTLSDKKASGVSSLLLGVYEENELV
YAGRAGTGLTAHDMEELRQKFESIRREDAPFKQAPEARSNEKITWLEPVLVAEIKFAEWT
NENLLRQASYKGLRTDKSPGEVKREDAANEKQADQDLPPAEEPEVQMETNSGMTVEGIKI
THPDKLVFADPEVKKADVVRYYAKATERMLPYAGNRILSIVRCPKGISSSCFYQKHPGPD
HKGVVTIPVVNNDGQKEDYFYIENAAGLISEVQMGTLEFHAWGSRIETLEKPDLMVFDLD
PDEGMDLERVRQGVKEIKSVLEQLSLTSYLKTSGGKGYHVVVPFQPSADWDLFHDFARRV
AEVMEQRWPDRYTSNIRKEKRKNRIFIDWIRNGRGATSVAPYSLRARAGARVSMPIAWEE
LDTVAPNGIGMTDALARMEKSDPWKDFFEIRQKLK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccggtctgaatgaatacaaccgaaaaagaaattttgaaaacacggaagagccg
gaaggccgagaggaaaagtctgaaaaccgcctgaggtttgtcgtccagcaccatatcgcc
cgcagggatcactttgacttccggctcgaatggaacggttctcttttaagctgggcggta
cccaagggaccctcccttgacacccgtgacaaaaggctcgccgtacgggtggaggatcat
ccgctcgattacaggaatttcgagggaacgattcccaaaggggaatatggaggcggagtc
gtgatgctctgggacgagggcttctgggaacctttcaccgaggtggatcaggggcttcgt
cagggttcgttaaaatttatcctgaagggaaggcggctcagaggaaattgggctctggtc
cgaatgaaggccaaagccggtgaagaggcgaaaaactggcttttactgaaggagcgggac
gattacgccaaagccggcgacagtatcgccgaattcacaaccagcgttcgcaccggacgc
accatggaggaaattgaagcgggggcggatgaaaaaatcacgcgaaatcccttcgacaga
accggcatacagctcgccaagctcgccgccgcggttcccgacggcagcggctggctgtat
gaactgaaatacgacggttaccggatcctctcctttctggaggggggcggtgcccgcctc
atcaccagaaacggcaacgattacgccgagcggtttcaggacgtcgccgactccctgacc
ggctgggccgcaggaagatccatggttctggacggcgagatggtcgtcaccgatgcacag
ggaaggacggatttccaggctctgcaaaactatatgagaaatcctgtggggaaaaacctc
gcttacatcgttttcgatctccttgccctgaatggggaggatctgagaggacgccccctg
atcgaccggaaagagacattggaagccttgatgaaaggcgctcccggaaatctttgctac
agccaacacgtcgtgggaaagggagtggaaagcttctccgccgcctgccaggcgaacctg
gaaggaatcgtcggcaaaaaggccgattccgtttacagcggaacgagaaacggagactgg
atcaagctaaaatgcggcaagcggcaggaattcgtcatcgggggatacacgctgtccgat
aaaaaagcgagcggggtcagttcccttctcctcggcgtctatgaagaaaacgaactcgtc
tatgccgggcgggccggaacgggcctgaccgctcacgacatggaggaactcaggcaaaaa
tttgaaagcatccggagagaagacgctcctttcaaacaggcgccggaagcgagatcgaac
gagaaaatcacatggcttgaacccgtactggtcgcggaaatcaaatttgccgaatggacc
aatgagaatctgcttcggcaggcaagttataaagggctgcgtacggacaagagccccggg
gaagtaaaaagagaggatgcggccaatgagaaacaggcggatcaggatctgccgcccgcc
gaggagccggaggtgcaaatggaaacaaacagcggcatgacggtcgagggaatcaaaata
acccatcccgacaaattggtttttgcggatcccgaagtgaaaaaagcggatgtggtccgg
tactacgctaaagcgacggagcgaatgctgccctacgcgggaaaccggattctcagcatc
gtacgctgtcccaagggaatctcctcctcctgcttttatcagaagcatcccggcccggat
cacaagggcgtcgtcacgattccggtcgtgaacaacgacgggcaaaaggaggactacttt
tatattgagaacgctgccgggctgatttccgaagtccagatgggcacgctggaatttcac
gcctggggaagccggatcgaaacgctggaaaagccggatctgatggtttttgacctggac
ccggacgagggaatggatctggagcgggtgcgccaaggcgtcaaagagatcaagagcgtc
ctggaacagctctctttgacctcgtatctcaagaccagcggaggcaaagggtatcatgtg
gtcgtgcctttccagccgtccgccgattgggacctgtttcacgattttgcaagacgggtc
gccgaagtcatggagcagcggtggcccgaccgctatacgagcaacatcagaaaagaaaaa
cggaaaaacaggattttcattgattggatccggaacggaaggggagccacaagcgtcgcc
ccctattccctgagggcgagagcgggagccagggtttccatgcctattgcctgggaagaa
ctcgacacggtcgcccccaacggaatcggcatgacggacgcgctcgcaagaatggagaaa
agcgatccgtggaaggatttttttgaaatcaggcaaaagctgaaataa
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