KEGG   Caproiciproducens sp. NJN-50: EQM14_03430
Entry
EQM14_03430       CDS       T05807                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
capr  Caproiciproducens sp. NJN-50
Pathway
capr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:capr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EQM14_03430 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:capr03400]
    EQM14_03430 (ligD)
Enzymes [BR:capr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EQM14_03430 (ligD)
DNA repair and recombination proteins [BR:capr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EQM14_03430 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme Dsc3_C
Other DBs
NCBI-ProteinID: QAT51211
UniProt: A0A410Q7C6
LinkDB
Position
complement(693146..695593)
AA seq 815 aa
MSPGLNEYNRKRNFENTEEPEGREEKSENRLRFVVQHHIARRDHFDFRLEWNGSLLSWAV
PKGPSLDTRDKRLAVRVEDHPLDYRNFEGTIPKGEYGGGVVMLWDEGFWEPFTEVDQGLR
QGSLKFILKGRRLRGNWALVRMKAKAGEEAKNWLLLKERDDYAKAGDSIAEFTTSVRTGR
TMEEIEAGADEKITRNPFDRTGIQLAKLAAAVPDGSGWLYELKYDGYRILSFLEGGGARL
ITRNGNDYAERFQDVADSLTGWAAGRSMVLDGEMVVTDAQGRTDFQALQNYMRNPVGKNL
AYIVFDLLALNGEDLRGRPLIDRKETLEALMKGAPGNLCYSQHVVGKGVESFSAACQANL
EGIVGKKADSVYSGTRNGDWIKLKCGKRQEFVIGGYTLSDKKASGVSSLLLGVYEENELV
YAGRAGTGLTAHDMEELRQKFESIRREDAPFKQAPEARSNEKITWLEPVLVAEIKFAEWT
NENLLRQASYKGLRTDKSPGEVKREDAANEKQADQDLPPAEEPEVQMETNSGMTVEGIKI
THPDKLVFADPEVKKADVVRYYAKATERMLPYAGNRILSIVRCPKGISSSCFYQKHPGPD
HKGVVTIPVVNNDGQKEDYFYIENAAGLISEVQMGTLEFHAWGSRIETLEKPDLMVFDLD
PDEGMDLERVRQGVKEIKSVLEQLSLTSYLKTSGGKGYHVVVPFQPSADWDLFHDFARRV
AEVMEQRWPDRYTSNIRKEKRKNRIFIDWIRNGRGATSVAPYSLRARAGARVSMPIAWEE
LDTVAPNGIGMTDALARMEKSDPWKDFFEIRQKLK
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgtcgcccggtctgaatgaatacaaccgaaaaagaaattttgaaaacacggaagagccg
gaaggccgagaggaaaagtctgaaaaccgcctgaggtttgtcgtccagcaccatatcgcc
cgcagggatcactttgacttccggctcgaatggaacggttctcttttaagctgggcggta
cccaagggaccctcccttgacacccgtgacaaaaggctcgccgtacgggtggaggatcat
ccgctcgattacaggaatttcgagggaacgattcccaaaggggaatatggaggcggagtc
gtgatgctctgggacgagggcttctgggaacctttcaccgaggtggatcaggggcttcgt
cagggttcgttaaaatttatcctgaagggaaggcggctcagaggaaattgggctctggtc
cgaatgaaggccaaagccggtgaagaggcgaaaaactggcttttactgaaggagcgggac
gattacgccaaagccggcgacagtatcgccgaattcacaaccagcgttcgcaccggacgc
accatggaggaaattgaagcgggggcggatgaaaaaatcacgcgaaatcccttcgacaga
accggcatacagctcgccaagctcgccgccgcggttcccgacggcagcggctggctgtat
gaactgaaatacgacggttaccggatcctctcctttctggaggggggcggtgcccgcctc
atcaccagaaacggcaacgattacgccgagcggtttcaggacgtcgccgactccctgacc
ggctgggccgcaggaagatccatggttctggacggcgagatggtcgtcaccgatgcacag
ggaaggacggatttccaggctctgcaaaactatatgagaaatcctgtggggaaaaacctc
gcttacatcgttttcgatctccttgccctgaatggggaggatctgagaggacgccccctg
atcgaccggaaagagacattggaagccttgatgaaaggcgctcccggaaatctttgctac
agccaacacgtcgtgggaaagggagtggaaagcttctccgccgcctgccaggcgaacctg
gaaggaatcgtcggcaaaaaggccgattccgtttacagcggaacgagaaacggagactgg
atcaagctaaaatgcggcaagcggcaggaattcgtcatcgggggatacacgctgtccgat
aaaaaagcgagcggggtcagttcccttctcctcggcgtctatgaagaaaacgaactcgtc
tatgccgggcgggccggaacgggcctgaccgctcacgacatggaggaactcaggcaaaaa
tttgaaagcatccggagagaagacgctcctttcaaacaggcgccggaagcgagatcgaac
gagaaaatcacatggcttgaacccgtactggtcgcggaaatcaaatttgccgaatggacc
aatgagaatctgcttcggcaggcaagttataaagggctgcgtacggacaagagccccggg
gaagtaaaaagagaggatgcggccaatgagaaacaggcggatcaggatctgccgcccgcc
gaggagccggaggtgcaaatggaaacaaacagcggcatgacggtcgagggaatcaaaata
acccatcccgacaaattggtttttgcggatcccgaagtgaaaaaagcggatgtggtccgg
tactacgctaaagcgacggagcgaatgctgccctacgcgggaaaccggattctcagcatc
gtacgctgtcccaagggaatctcctcctcctgcttttatcagaagcatcccggcccggat
cacaagggcgtcgtcacgattccggtcgtgaacaacgacgggcaaaaggaggactacttt
tatattgagaacgctgccgggctgatttccgaagtccagatgggcacgctggaatttcac
gcctggggaagccggatcgaaacgctggaaaagccggatctgatggtttttgacctggac
ccggacgagggaatggatctggagcgggtgcgccaaggcgtcaaagagatcaagagcgtc
ctggaacagctctctttgacctcgtatctcaagaccagcggaggcaaagggtatcatgtg
gtcgtgcctttccagccgtccgccgattgggacctgtttcacgattttgcaagacgggtc
gccgaagtcatggagcagcggtggcccgaccgctatacgagcaacatcagaaaagaaaaa
cggaaaaacaggattttcattgattggatccggaacggaaggggagccacaagcgtcgcc
ccctattccctgagggcgagagcgggagccagggtttccatgcctattgcctgggaagaa
ctcgacacggtcgcccccaacggaatcggcatgacggacgcgctcgcaagaatggagaaa
agcgatccgtggaaggatttttttgaaatcaggcaaaagctgaaataa

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