Candidatus Paracaedimonas acanthamoebae: IM40_01885
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Entry
IM40_01885 CDS
T03240
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IM40_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_01885
Enzymes [BR:
caq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM40_01885
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IM40_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIL12550
LinkDB
All DBs
Position
355454..358915
Genome browser
AA seq
1153 aa
AA seq
DB search
MLKLDHLIKESSQVTLEGIPEEAEAFLLKEMLAQKLGTSFIYICHHETHINELEATLRFL
CPDLDILIFPPWDCLPYDRMSPRQDITGDRVTTLLKLNKGFDKPILIITTIQAFLQRVAP
QEIFKNAELYLKAGAHFNLKDFENYCHKYGFTRVSTVREPSEYAVRGGIIDLFPPSSDQP
YRLDLFGDEIDNIKLFDPFSQRSLESVKEINLTPSCEVLLDEKSIEAFRTSYRKVFGHTG
EKDPLYQAISAGQSYAGMEHWLPLFYPHLETLLDYVPEATLVFDTKAFETAKAQLELIQE
NYHARQEFVNIRADNRPPYYPLPPELLYLSLEDIERNISGKTVVHFSPFSKEGSAQLEGR
IMQDFSAARVQQNINLIDALKERSEGYIKAQKKVLLSCMTIGSRLRLQGLLQDHGCQASL
VETWADFTALPASVIGIALIPIEQGFEFKHFVLITEQNIFGERQSQPLKRKRRSDLFIGE
ASALNEGDYVVHQEHGIGQFQGLQTLHVGNIPHDCVSLIYEGGDKLFVPVENLEILSRYG
GEDSIVSLDKLGSSAWQQRKARVKKRLEDIAEHLIALAAERALRVGEIYQPSEGLYNEFS
ARFPYHETEDQERAILEVLQDLESGKPMDRLICGDVGFGKTEVALRAAFVVATAGKQVAI
ITPTTLLCRQHYQNFQKRFEGFGLKVAQLSRLVSAREASEIKEGLEKGHIDLVVGTHALF
AQSTHFKNLGLVIVDEEQHFGVKQKEKLKDLQKDVHVLTLTATPIPRTLQMSLSGVRDMS
IIATPPVDRLAVRTFVMPFDEIVIREALTREFNRGGQVFYVCPRIEDLESIREKLKILMP
EAKVAVAHGQLAPTILEKIMNDFYDRHYSILLSTNIIESGLDIPAVNTIIIHRSDLFGLA
QLYQLRGRVGRSKTRGYAYLTIPDVITPTAQKRLEVMQTLDTLGAGFQLASHDMDIRGAG
NLLGQQQSGHIREVGVELYQQMLQDAVDTVRHKSTGVVPQQTAVWTPQIHLGLPILIPEE
YVVDLSTRLTLYRRLSNLENEEEIEGFILELLDRFGPLPEEVKNLLSVLKLKQLCRQVGV
EKIETGEKGAIFTLYNNTFPNPAALIQFIQTQPGTVKLRPDHKLVFLRVWKEAKERVEGC
EGILKELKMLISH
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atattaaaactagaccatttgattaaagagtcttctcaggtaactttggaggggattccg
gaagaggcagaagcttttttgttaaaagagatgcttgcgcagaaattaggcacttccttt
atctatatttgtcatcatgaaactcatattaatgaactggaagccacgctgaggtttttg
tgtcctgatctcgatatattaatattccctccgtgggattgtttgccttacgatcggatg
tctcctaggcaggatatcactggtgaccgagtgaccacgttgcttaaactcaataaaggt
tttgataaaccaatacttattattacaacaattcaagcttttctccagcgcgtggcacct
caagagatatttaaaaatgctgaactttatttaaaagcaggagctcattttaatcttaaa
gattttgagaactactgtcataaatatgggttcacgcgcgtctcaacggttagagaacca
tctgaatatgctgtgcgagggggtattattgatctctttccgccgagttccgatcaacct
tatcgattagatctttttggggatgagattgataatattaaactatttgatcctttctct
cagagaagcttagaaagtgttaaagaaatcaatctaacgcccagttgtgaagtgttgctt
gatgagaaatctatcgaagcttttcggacttcctatcggaaagtctttgggcatacggga
gaaaaggatcctctctatcaagcaattagcgccggtcaaagttatgctgggatggagcat
tggctccctttattttatcctcatcttgaaacgctcctagactatgttccggaggcaact
ttagtctttgataccaaagcatttgaaacagcaaaagctcagcttgaacttattcaggaa
aattaccacgctagacaagagtttgtgaatatcagagctgataatagaccgccttattat
cctttgccaccagagctattgtatctctctcttgaagatatagagagaaatattagcggc
aaaacagtcgtgcatttttcgccgttttctaaagaaggaagcgctcaattggaagggcgt
ataatgcaagattttagtgctgccagagttcaacaaaatatcaaccttattgacgcgctt
aaggaaagaagtgaaggttatataaaagcgcaaaaaaaagttcttctctcttgtatgaca
atagggtcgcgcttaagactacaaggcttattacaagaccatggttgccaagcaagctta
gttgaaacatgggctgattttacagctctaccagcgtcagttattggaattgcattaatt
ccgattgaacaaggttttgagtttaaacattttgttttgatcactgagcaaaatattttt
ggcgaacgtcaaagtcagcctcttaaaagaaagcgacgttccgatctttttattggagaa
gcttcagccctcaatgaaggcgattatgtggtacaccaagagcatgggattgggcaattt
caaggtttgcagacattgcacgtcggcaacattcctcatgattgtgtcagtctcatttat
gaagggggtgataagctttttgttcctgttgagaatttagagatactttctcgatacggg
ggcgaagacagtattgtgtcgctcgataagctcgggagttctgcgtggcagcaacgaaag
gcgcgcgttaagaaaaggcttgaagatattgctgagcatctgattgcacttgcggctgag
cgggctttgcgcgtaggagaaatttaccaaccttcagaaggcctgtataacgaattttct
gcccgtttcccttatcatgaaacagaagatcaagagcgtgcgattttagaagttttacaa
gatcttgaatctggtaagccaatggatcgcttaatatgcggcgatgttggatttggaaag
acagaggtggctttacgtgcagcttttgtcgtagcaacggcagggaagcaagtcgcaatc
attacaccaacgaccttattgtgccgccaacattaccaaaatttccaaaagcgctttgaa
ggatttggtcttaaggttgcgcaattatcccgtttagtttcggcaagggaagcttcagaa
attaaagaaggcctagaaaaagggcatattgatttggtcgtgggaacgcatgcgctcttt
gcacaatccacccattttaaaaatctagggcttgttatcgttgatgaagagcaacatttt
ggcgtcaaacaaaaagaaaaactaaaggatctgcaaaaggatgttcatgtcttaacgttg
acggcaacgccgattccgcgaacattgcagatgtctttaagtggtgtgagagacatgagt
attattgcaacgcctcctgtcgaccgtcttgctgtaagaacatttgtgatgccttttgat
gagattgtgatacgagaggcattgacacgcgagttcaatcgcggaggacaagttttttat
gtttgtccgcgcattgaggatcttgagagcattcgagagaaattaaaaatcttgatgcct
gaggcaaaagttgcagtggctcatggtcagttggcccccaccattctggagaagatcatg
aatgatttttatgatcgtcattattcaatccttctctcaaccaatattattgaatcaggc
cttgatattccggcggtcaatacaattattattcatcgatcagatctttttgggttagct
caattgtatcaattaaggggccgtgttgggcgttctaagacaagaggttatgcttattta
acaattccggatgtgatcaccccaacggcacagaagcgtttagaagtcatgcaaacgctt
gatacgctgggggctgggtttcagttagcaagccatgatatggatatcagaggcgcagga
aatcttcttggccagcagcaatcagggcatattcgagaagtgggggttgagctttaccaa
caaatgttgcaagacgcggttgacacagtgcgtcataaatcaacaggtgtagtgcctcag
caaacagcggtatggacgccgcaaattcatcttggtttgccgatcctgattcctgaagaa
tatgttgtcgatctttcaacgcgtttgacgttatatcgtcgtctttcaaatttagaaaat
gaagaagaaatagaaggttttatcttagagttattagatcgatttggccctttacctgaa
gaagttaaaaacctcttaagcgtccttaaactaaaacaattatgtcgtcaggtaggtgtt
gaaaagattgagaccggtgagaagggggccatttttaccttgtataataatacgtttcca
aatcctgctgcgctcattcaatttattcaaacacaaccaggaaccgtgaaactcaggcca
gatcataagcttgtctttttacgggtttggaaagaagcaaaagaacgagtagaggggtgt
gagggtatcctgaaagaattgaaaatgttgatatcgcactaa
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