Corynebacterium aquatimens: CAQUA_07475
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Entry
CAQUA_07475 CDS
T09232
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
caqm
Corynebacterium aquatimens
Pathway
caqm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
caqm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAQUA_07475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caqm03400
]
CAQUA_07475
Enzymes [BR:
caqm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAQUA_07475
DNA repair and recombination proteins [BR:
caqm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAQUA_07475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WJY66191
LinkDB
All DBs
Position
complement(1633419..1635950)
Genome browser
AA seq
843 aa
AA seq
DB search
MAGKKFEVGGHALTVSNLDKVIYPATDGHDAVTKAEVMHYYLAVAGILVPQVAGRPVTRK
RWPDGVGSEPFFRKDLEDSAPEWIARADISHKSGTNTYPLLSGSGAEAGTDAATLAWFAQ
VAALELHTPQWRFNSDGTPANPDRMVFDLDPGEGVSLTDCAKVARWCRDIVEDMGMACVP
VTSGSKGIHLYAGLDGSHTAEQVAAVAHELAKALEADHPDEVTSVMKKSERAGKVFIDWS
QNNGKKTTIAPYSLRGKDRPTVAAPRTWEELAAADLRHLTFDEVIARVEDGCDPIASLGF
EEPDRLSTYRSMRDPSKTAEPVPLSRPGRRDSRDNHGSAPIFVIQEHHASHLHWDFRLEH
SDVLVSWAIPKGPPLDPDLTRLAVQTEDHPIEYAEFEGTIAKGEYGAGEVKIWDSGTYTR
EKWREGKEVIAVLHGRADGGLGGIPRRFALIRSNKDNSTKDDANWLIKFMKDQSVASGDA
PQAGPRREAANPAEGSSREAAKAASRSSISIEHLPEPMLARAGTEADVQRGRREGETWAF
EMKWDGYRMLAGVGTDGVALASRNGKDYTAVFPEVAELTGLLDGEAVERGGAIFDGEIVA
LDERGRPNFGLLQAVAKGDRDGEDFDAELRYMVFDVLQLGAPGASEAQVRSLLRTPYAER
RDVLGSVLKSGDVVAVPPSYSGALDNAVTVSRELGLEGIVAKRADSVYLPGQRGRAWLKM
KFQHHQEVVVIGAREGKGGRSGGIGSLLLAVPNDDGELIYAGRVGTGFSARQLEEIEKRL
RRIKRATPPVEVPAADAADAWWVTPKLVGEVAVTGRTRGGSVRHAVWRGWREDKDPSDVR
WEV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcaagaaattcgaggtcggcgggcacgcgcttactgtttccaacttggacaag
gtgatttacccggccaccgacggccatgacgcggtgacaaaagccgaggtgatgcactac
taccttgcggtggcgggcatattggtcccgcaggtcgctggccggccggtgacccgcaaa
cggtggcccgacggagtgggctcggagccgtttttccgcaaggatctggaggactccgcg
ccggagtggatcgcgcgcgccgacatctcccataaatccggcaccaacacctacccgctg
ctttccggcagcggcgccgaagctggcaccgacgccgccacgctggcctggttcgcccag
gtcgcagccttagaactgcacaccccgcagtggcgctttaacagcgacggcacacccgcg
aaccccgaccgcatggtttttgacctcgacccgggtgagggagtgagcctcaccgactgc
gcgaaggtcgcgcggtggtgccgggacatcgtcgaagacatggggatggcctgcgtgccc
gtgacctctggttcgaaggggatccatctttatgccgggctcgatggctcgcacaccgcg
gagcaggttgccgctgtcgcccacgaactggccaaagcgctggaagccgaccacccggac
gaggtcacgtctgtgatgaaaaagtctgagcgcgccgggaaagtcttcattgactggagc
cagaacaacggcaaaaagaccacgattgcaccctattcgctgcggggcaaggaccgcccc
accgtcgccgcaccacgcacgtgggaggagctcgctgctgctgacctgcgtcacctcacc
ttcgacgaggtcatcgcgcgcgtcgaggacggctgcgaccccatcgcatccctgggcttt
gaggagcccgatcgcttatcgacgtaccgctccatgcgcgatccctccaaaaccgccgaa
cccgtaccactgtcacggcccggccgccgcgacagccgcgacaaccatggcagcgcaccg
atctttgtcatccaagaacaccacgcttcccacctgcactgggattttcggttagaacac
tccgacgttttagtctcctgggccatcccgaaaggcccgccgcttgaccctgatctgacc
cgcctggccgtacaaaccgaagaccaccccatcgagtacgccgagttcgaaggcaccatc
gccaagggagaatacggcgccggggaggtaaagatctgggactccggcacctacacccgc
gagaagtggcgcgaaggcaaagaggtcatcgccgtcctccacggccgcgccgacggcggc
ctcggcggcatcccccgacgcttcgccctaatccggtccaataaggacaactccacaaaa
gacgacgcgaactggctgatcaagttcatgaaagaccagagcgtggcgtctggcgacgcc
ccgcaagcgggccctcgtcgtgaggcggcgaatcccgccgaaggttcttctcgtgaggcg
gcgaaggccgcctcacggtcgtcgataagcattgagcatctgcccgaaccgatgctggcg
cgcgcgggcaccgaggccgacgttcagcgcggcaggcgggagggggagacgtgggcgttt
gagatgaagtgggacggctaccgcatgctcgctggtgttggcacggatggggtggcgctg
gccagcaggaacgggaaagattatacggccgtttttcctgaggtcgcggagctgacgggc
cttctggatggggaggcggtggagcgtggcggcgcgattttcgacggcgagatagtggcg
ctcgatgaacgcgggcggccgaactttgggctgctgcaggcggtggcgaagggcgaccgt
gatggtgaggattttgatgcggagctgcgctacatggttttcgacgtgttgcagcttggc
gcgccgggggcgagtgaggcacaggtgcggtcactgctgcggacgccctatgcggagagg
cgcgacgtgttgggctccgtgctgaaaagtggtgacgtggttgcggtgccgccgtcgtat
agcggggcgttagacaacgcggtgaccgtgagccgtgagctgggactcgaaggcatcgtg
gcgaagcgcgcggattcggtgtacctgccggggcagcgcgggcgcgcgtggctgaagatg
aagtttcagcaccaccaagaggtggtggtcatcggcgcgcgcgagggcaaaggcgggcgc
agcggcgggatcggttcgcttctgctcgccgtgcctaacgacgatggggagctcatctac
gcaggccgggtagggacgggttttagcgcgcggcagctggaggagatagagaaacgtctt
cgcagaatcaaacgcgcaaccccaccggtagaggtgccggcggcggacgcggcggacgcg
tggtgggtgacgccgaagctcgtgggagaagtcgccgtcaccggccgcaccagaggtgga
agcgtccgacacgcagtgtggcgcgggtggcgcgaagataaagacccctccgacgtgcgc
tgggaagtgtga
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