Comamonas aquatica: KAQ61_04620
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Entry
KAQ61_04620 CDS
T07338
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caqt
Comamonas aquatica
Pathway
caqt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KAQ61_04620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caqt03400
]
KAQ61_04620 (mfd)
Enzymes [BR:
caqt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KAQ61_04620 (mfd)
DNA repair and recombination proteins [BR:
caqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KAQ61_04620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QTX21769
LinkDB
All DBs
Position
complement(978790..982263)
Genome browser
AA seq
1157 aa
AA seq
DB search
MDLPKLTPGHRFSLPTPVGSADALLLARLAQREKGQGRITAIVTADASDAQRLIDEMAFF
APQLRTALFPDWETLPYDTFSPHQDLISERLATLWRIRQRDHAHGADVVLVPATTALYRL
APPSFLAGYTFEFQQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSD
VPYRVDLFDDEIDSIRTFDPDSQRSLDTVPAVRLLPGREFPMDEDARAKFRNRWRELLEG
DPTRSRIYKDMGAGVATAGIEYYLPLFFDATATVFDYLGDDATLVLHGELEPAFQRFWQD
TKERFRLVQGDPERPALPPDTLFLNAEQFYQSAKPYPQLALRPGVDDVADSAFFQKLPDL
SVVRGAEDPLQRLQAHLRSAQRRVLVLAESDGRRESLLDFLRSSQLNPPAFDSLYEFQST
AHERLGIATSNLMRGFAWIEAGIDFVTETELFATTGTTRRRKKQEQVSDVDALIKDLSEL
KVGDPVVHSQHGIGRYHGLVNMDVGQKNADGTPALQEFLHLEYAKDAVLYVPVSQLHHIS
RYTGVTPESAPLHSLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRLSAQDY
EVFANDFGFEETADQKAAIHAVIHDMVSPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPVRVAEVSRFRTTKEVNAALQGLGEGSVDIVVGT
HKLLSSSVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRSESQGVIREAVLRELKRGGQCYFLHNEVETIENRRQALE
EILPEARIAVAHGQMPERELEKVMRDFVAQRFNILLCSTIIETGIDVPSANTIVISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAQQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEIGFQLYNEMLAEAVRSLKAGKEPDLLSPMAVTTEINLHAPA
LLPNDYCGDVHLRLSFYKKLATAKSTDQIDNLLEEIVDRFGKLPPQAQTLIDTHRLRVLS
EPYGVIKVDAAPGVIHITFKPNPPVEPLQIIHLIQKNKHIKLAGNDKLRIERDLPDPKAR
AQMVRDVLRSLGTPTTA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcccaaactcacgcccggtcaccgtttttccctgcccacgcccgtgggcagc
gccgatgccttgctgctggccaggctggcacagcgtgagaaaggccagggccgcatcacc
gccatcgtcaccgccgacgccagcgatgcccagcgcctgatcgatgaaatggcgttcttt
gcgccccaactgcgcacggcgctgttcccggactgggagaccctgccctacgacaccttc
tcgccgcaccaggacctgatcagcgaacgcctggccacgctgtggcgcatccgccagcgc
gaccatgcccacggcgcggacgtggtgctggtgcccgccaccacggcgttgtaccgcctg
gcaccgccatccttcctggccggctacaccttcgagttccagcagggccagaagctggac
gaggccaagctcaaggcccagctgacgctggcgggctaccagcatgtctcgcaggtggtc
agccatggcgaatacgccgtgcgcggcggcctgatcgacctgttccccatgggctcggac
gtgccctaccgcgtggacctgttcgacgacgagatcgactccatccgcaccttcgacccg
gacagccagcgcagcctggacaccgtgcccgccgtgcgcctgctgcccgggcgcgagttc
cccatggacgaggacgcgcgcgccaagttccgcaaccgctggcgtgagctgctggagggc
gaccccacgcgcagccgcatctacaaggacatgggcgccggcgtggccacggccggtatc
gagtactacctgccgctgttcttcgacgccacggccacggtgttcgactatctgggcgac
gacgccaccctggtgctgcacggcgagctggagcccgccttccagcgtttctggcaggac
accaaggagcgcttccgcctggtgcagggcgacccggagcgccccgccctgccgccggac
accctgttcctgaacgccgagcagttctaccagagcgccaagccctacccgcaactggcc
ctgcgccccggcgtggacgatgtggcggacagcgccttcttccagaagctgcccgacctg
tccgtggtgcgcggcgccgaagacccgctgcagcgcctgcaggcccacctgcgcagcgcc
cagcgccgcgtgctggtgctggccgaaagcgatggccggcgcgaaagcctgctggacttc
ctgcgctcctcgcagctgaacccaccggcctttgattcgttgtacgaattccagagcacg
gcccacgaacgcctgggaattgccacctccaacctgatgcgcggctttgcctggatcgag
gccggcatcgactttgtcaccgagaccgagctgttcgccaccaccggcaccacgcgccgg
cgcaagaagcaggagcaggtcagcgacgtggacgcgctgatcaaggacctgtccgagctg
aaggtcggcgacccggtggtgcacagccagcacggcatcggccgctaccacggcctggtc
aacatggacgtgggccagaagaacgccgatggcacgccggcgctgcaggagttcctgcac
ctggaatacgccaaggacgcggtgctgtacgtgcccgtcagccagctgcaccacatcagc
cgctacaccggcgtcacgcccgaatccgccccgctgcacagcctgggcagcggccagtgg
gaaaaagccaagcgcaaggcggccgagcaggtgcgcgatgcagccgccgagctgctgaac
atctatgcccggcgcgctgcgcgccagggccacgccttccgcctgagcgcgcaagactac
gaagtctttgccaacgactttggctttgaagaaaccgccgaccagaaggccgccatccat
gccgtgatccacgacatggtcagcccccagcccatggaccgtctggtctgcggcgacgtg
ggctttggcaagaccgaggtcgcgctgcgcgcggcctttgtggccgccatgggtggcaag
caggtggccttcctggcgcccaccacgctgctggccgagcagcactaccagacgctggtg
gaccgtttctccaaatggccggtgcgcgtggccgaggtctcgcgctttcgcaccaccaag
gaggtcaacgcggcgctgcagggcctgggcgagggttcggtggacatcgtggtcggcacg
cacaagctgctgtccagttcggtcaagttcaaggacctgggcctgctcatcatcgacgag
gaacaccgctttggcgtgcgccacaaggaggccatgaaggccctgcgtgccgaggtggac
gtgctgacgctgaccgccacccccatcccgcgcaccatgggcatggcgctggaggggctg
cgggatctgtcggtgatcgcgaccgcgccgcaacggcgtctggccatcaaaacctttgtg
cgcagcgaaagccagggtgtgatccgcgaggccgtgctgcgcgagctcaagcgcggtggc
cagtgctacttcctgcacaacgaggtggagaccatcgagaaccgccgccaggcgctggag
gaaatactgcccgaggcacgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gaaaaggtgatgcgcgactttgtggcgcagcgcttcaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagcgccaacaccatcgtcatcagccgtgccgacaag
ttcggtctggcccagctgcaccagctgcgcggccgcgtgggtcgcagccaccaccaggcc
tatgcctacctgatggtgccggacatcgaaggcctgaccaagcaggcccagcagcgcctg
gacgccatccagcagatggaggaactgggcagcggcttctacctggccatgcacgacctg
gaaatccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggagatc
ggcttccagctctacaacgagatgctggccgaggccgtgcgcagcctcaaggccggcaag
gagcccgacctgctgtcgcccatggccgtcaccaccgagatcaacctgcacgccccggcc
ctgctgcccaacgactactgcggcgatgtgcacctgcgcctgtcgttctacaaaaagctg
gcgacggccaagagcacggaccagatcgacaacctgctggaagagatcgtggaccgcttc
ggcaagctgccaccgcaggcgcagacgctgatcgacacccaccgcctgcgcgtgctgtcc
gagccctatggtgtgatcaaggtggacgcggcccccggggtgatccacatcaccttcaag
cccaatccgccggtggagccgctgcagatcatccacctgatccagaagaacaagcacatc
aagctggccggcaacgacaagctgcgcatcgagcgcgacctgcccgaccccaaggcccgc
gcccagatggtgcgcgatgtgctgcgcagcctgggcacgccgaccacggcctga
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