Comamonas aquatica: KAQ61_17900
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Entry
KAQ61_17900 CDS
T07338
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caqt
Comamonas aquatica
Pathway
caqt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caqt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KAQ61_17900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caqt03021
]
KAQ61_17900 (rpoC)
03400 DNA repair and recombination proteins [BR:
caqt03400
]
KAQ61_17900 (rpoC)
Enzymes [BR:
caqt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KAQ61_17900 (rpoC)
Transcription machinery [BR:
caqt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KAQ61_17900 (rpoC)
DNA repair and recombination proteins [BR:
caqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KAQ61_17900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QTX20828
LinkDB
All DBs
Position
3803554..3807762
Genome browser
AA seq
1402 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKQQEFGYDEFTAK
MGAEGIKDLLESIDIDSEIERLRGDLTGSEVKVKKNAKRLKLLEAFKKSGIKPEWMVLEV
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQE
AVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYL
KLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPV
MLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEAR
TLMLASNNVLFPASGEPSIVPSQDVVLGLYHATRDKINGKGEGMVFVDTNEVQRALDAGE
VELHAKISVRLPEWTKDKESGEFVKSLSLVETTVGRALLSEILPKGLPFSHMNKALKKKE
ISKLINSSFRKCGLKATVVFADKLLQNGFRLSTHAGFSVSIDDMLVPPQKAEILARAESE
VKEIEQQYVSGLVTSGERYNKVVDIWGKAGDDVSKVMMDQLKVQKTIDRHGHEVDQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTSNGYLMRAIVEGGEVIESLRDRVL
GRSTAEDVLHPENRSVLLPAGTLLNEDLIEELEAQGVDEIKVRTALTCETRYGLCATCYG
RDLGRGGMVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGTIGF
NATMRYVTNTKGELVVISRSGEIVISDNGRERERHKVPYGAILTIKADQAIKAGTILANW
DPLTRPIITEYAGQVKFENVEEGLTVAKQVDDVTGLSTLVVIDPKRRGSAKVVRPQVKLI
DANNQEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDLEGKVWEELVPKERNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENIGESTYIAGEQVERSEILNTNEALQAQGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDDAERRA
IAEAEAAEMAGDVEASAEDSAA
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaaaattcgttcctggtctttcggtgaggtgaagaag
cccgagaccatcaactaccgtacgttcaagcccgagcgcgacggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgtggtgtgatctgcgaaaagtgcggcgtggaagtcacccagaccaaggtgcgtcgcgaa
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccttcgcgtctgggtctggtgctggacatgacgctgcgcgacatcgaacgcgtgctgtac
tttgaagcatacgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaagcagcaagagttcggctacgacgaattcacggccaag
atgggcgccgaaggtatcaaggacctgctggaatccatcgacatcgacagcgagatcgag
cgcctgcgtggcgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctg
aagctgctggaagcgttcaagaagtccggcatcaagcccgagtggatggtgctggaagtg
ctgcccgtgctgcccccggacctgcgtcccctggtgcccctggacggcggccgcttcgcg
acctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgtcgc
ctgctggagctgaaggcccctgaaatcatcgcgcgcaacgaaaagcgcatgctgcaggaa
gccgtggactcgctgctggacaacggtcgccgtggcaaggccatgacgggcgccaacaag
cgtgccctgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaac
ttgctgggcaagcgcgtggactactccggtcgttccgtgatcaccgtgggtccttacctc
aagctgcaccagtgcggtctgcccaagctgatggccctggagctgttcaagcccttcatc
ttctcgcgcctcgaggccatgggcatcgccacgaccatcaaggccgcgaagaaggaagtc
gaatccggcacccccgtggtctgggacatcctggaagaggtcatcaaggaacaccccgtg
atgctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcgttcgagcccatcctg
atcgaaggcaaggccatccagctgcaccccctcgtctgcgcggccttcaacgccgacttc
gacggtgaccagatggctgtgcacgtgcccctgtcggtggaagcacagatggaagcccgc
acgctgatgctggcctccaacaacgtgctgttccccgcttcgggcgaaccttccatcgtg
ccttcgcaggacgtggtgctgggcctgtaccacgccacccgcgacaagatcaacggcaag
ggcgaaggcatggtgttcgtggacaccaacgaagtgcaacgcgccctggacgctggtgaa
gtcgagctgcacgccaagatcagcgtgcgcctgcccgagtggaccaaggacaaggaaagc
ggcgaattcgtcaagagcctgagcctggtggaaaccaccgtgggtcgcgccctgctgtcc
gagatcctgcccaagggcctgccgttcagccacatgaacaaggcgctgaagaagaaggag
atctccaagctgatcaactcctccttccgcaagtgcggtctgaaggccaccgtggtgttc
gccgacaagctgctgcaaaacggcttccgcctgtcgacgcacgccggcttctcggtgtcc
atcgacgacatgctggtgcctccgcaaaaggccgagatcctggcccgcgccgagtccgaa
gtgaaggaaatcgagcagcagtacgtctcgggtctggtgacctccggcgagcgctacaac
aaggtggtggacatctggggcaaggccggtgacgacgtgtccaaggtgatgatggaccag
ctcaaggtccagaagaccatcgaccgccacggccacgaagtggaccaggagtcgttcaac
gccatctacatgatggccgactccggcgcccggggttctgcagcgcagatccgtcagctg
gccggtatgcgtggcctgatggccaagcccgatggctcgatcatcgagacacccatcacc
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacccacggtgcccgt
aagggtctggccgacacggcgttgaagaccgcgaactcgggttacctgacgcgtcgtctg
gtggacgtcacgcaagacctggtcgtgaccgaacaggactgcggcacctccaacggctat
ctgatgcgcgccatcgtcgaaggcggtgaagtgatcgaatccctgcgcgaccgcgtgctg
ggccgctcgaccgccgaagacgtgctgcaccccgagaaccgttccgtgctgctgcctgcc
ggcaccctgctcaacgaagacctgatcgaagagctggaagcccagggcgtggacgagatc
aaggtgcgcaccgcgctgacctgcgaaacccgctacggcctgtgcgccacctgctacggc
cgtgacctgggtcgcggcggcatggtgaacctgggcgaagccgtgggtgtgatcgctgcg
cagtccatcggtgaacccggtacccagctgaccatgcgtaccttccacatcggtggtgcc
gcgtcgcgcgctgccatcgcctcgagtgtggaagccaagtccaacggcacgatcggcttc
aacgccacgatgcgctatgtgaccaacaccaagggtgaactggtggtgatttcccgctcc
ggcgaaatcgtcatcagcgacaacggtcgcgagcgtgagcgtcacaaggtgccttatggc
gccatcctgacgatcaaggccgaccaggccatcaaggccggcacgatcctggcgaactgg
gatccgctgacccgccccatcattaccgaatacgccggccaggtgaaattcgagaacgtg
gaagaaggcctgaccgtggccaagcaggtggacgatgtgaccggtctgtcgaccctggtc
gtgatcgaccccaagcgccgtggttctgccaaggtggtgcgtccccaggtcaagctgatc
gacgccaacaaccaggaagtcaagatccccggcaccgaccactcggtgacgatcggcttc
caggtgggcgcgctgatccaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatccccgtcgaaggtcagaagacccgcgacattaccggtggtctgccccgtgtg
gccgagctgttcgaagcccgtacgcccaaggacaagggcacgctggccgagatgaccggt
accgtgtcctttggtaaggaaaccaagggcaaggtccgcctgcagatcaccgatctggaa
ggcaaggtctgggaagagctggtgcccaaggagcgcaacatcctggtccacgaaggccaa
gtggtgaacaagggtgagctgatcgtggacggccccgccgatccacaggacatcctgcgc
ctgctgggtatcgaggaactgtcgcgctacatcgtggacgaagtgcaggacgtgtaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgt
cgtgtggtggtcgagaacatcggcgagtccacctacatcgctggcgagcaggtggagcgt
tccgagatcctcaacaccaacgaagcgctgcaggcccaaggcaagatccctgccacgtac
tccaacgtgctgctgggtatcaccaaggcctcgctgtcgaccgactcgttcatctctgcg
gcgtccttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtgatcgtgggtcgcctgatccctgccggtaccggc
ctggcctaccaccaggcccgcaaggccaaggacgccatggacgacgccgagcgccgtgcc
atcgccgaagccgaagcggctgaaatggccggtgatgtcgaggcttccgccgaagacagc
gctgcctaa
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