Corynebacterium aurimucosum: cauri_0908
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Entry
cauri_0908 CDS
T00887
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
car
Corynebacterium aurimucosum
Pathway
car03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
car00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
cauri_0908 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
car03400
]
cauri_0908 (mfd)
Enzymes [BR:
car01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cauri_0908 (mfd)
DNA repair and recombination proteins [BR:
car03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
cauri_0908 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ACP32505
UniProt:
C3PFA1
LinkDB
All DBs
Position
1000699..1004337
Genome browser
AA seq
1212 aa
AA seq
DB search
MLGGLLKVAASDPKLKGLASQVGEASLHITGIDQARPWAIGTLAHHAPVLVVTASGREAE
DLTAELTAMLGDKVAYFPAWETLPHERLSPAADIVGKRARVLDLVGAGKAQVVVTSARGY
CQPILSKVEGRAPIFLKEEDEHELSHILSELEFRAYKHVDMVAKRGEYATRGGILDVFPT
TSDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGEVAIYPARELPITNEVAARARELAR
KFGGNAALAELLTKVGEHIPAEGMEAVLAVLADVPFVTLPELLAAGTHVLLVAPEKIRTR
IADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTSASSYRSYESLETTCRNIEAPLWTFA
PPGMFAAAESETLPLDFEPGPTPRGDITEIDAMMAQLLAHTTAGGRAAFIAPAQGAIKRM
VERFAEKGIPTKVATPGWEPSPGEVTLYQALSHAGLVFPKVRKLKDAEALPLVVITETDL
TGNRVGDIAGAKRRPAKRRNRVDPLALKQGDYVVHETHGIGKFLKMAERTVQSGDETSRR
EYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEAPTLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQAAPGHQFGPDTPWQAEMEDNFPFVETEDQMLAIDAVKEDMESTVPM
DRVVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTFRERMQGFPVDIEV
LSRFTSAKESKEILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHI
KALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAI
RRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMNEDVLERTVQGFWDREF
DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL
TETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEA
VETFKALARGETPVVTDEGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAASKENADL
AHVVEEMQDRYGPVPEPVERLLAVARLRHQARRAGVSDITVQGTRIKVHPVELADSKQVR
LKRLFPGSNYRAAAKAIQLNFPKAGRNVTDPKLRDIELLQWMADFLASMFELERVDVSGA
KTKKNVISVGEK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgggctgctcaaggtagccgcctcagatccgaaacttaaagggctcgcctcc
caagtgggggaagcctcattgcacattactggcattgaccaggcgcgcccgtgggccatc
ggcacgctggcgcaccatgcgccggtgctggtggtgactgcctccgggcgcgaggcggag
gatctcaccgcggagctgacggccatgctgggggataaggtcgcttacttcccggcatgg
gagacgcttccgcatgagaggttgtcgccggccgcggatatcgtcggcaagcgcgcgcgt
gtgctcgacctcgtgggggcgggcaaagcccaggtcgtggtgacctctgcccgcggatat
tgccagcccatcctgagcaaggtggagggccgtgcgcccatcttcctgaaggaagaagat
gagcacgagctttctcatatcctgtcagagctggagtttcgcgcttataagcacgtggat
atggtggccaagcgcggtgaatatgccacgcgtggcggcattctcgatgttttccccaca
acctccgattacccggtgcgcgtcgagttttggggcgatgagattacggatatccgtcag
ttctctgtggcggaccagcgtgccatccccgagattgaggtcggcgaggtcgctatctat
cccgcccgcgagctgccgatcactaatgaggtcgccgcacgtgcccgcgagctggcgcgg
aagtttgggggcaatgcggctctggcagagctgttgaccaaagtaggggagcacatcccg
gccgaaggtatggaagccgtgctggccgtgcttgccgacgtcccctttgtcaccctccct
gaactccttgcagcaggcacccatgtgttgctcgtggcgccggagaagatccgcacccgc
attgcagacctggaatccaccgatgcggagttcttggctgctggctgggaggccgccgcg
atgggcgcggatggtccgttggctgccgagggcttggacacctcggcgtcgagttaccgc
tcctatgagtctttagagacgacgtgccggaatatcgaggccccgctgtggactttcgcc
ccgccagggatgttcgccgccgccgaatcggaaaccctgccgctggactttgagcccgga
cctactccgcgcggtgatatcacagagattgatgccatgatggcgcagcttctggcgcac
accaccgccggcgggcgtgccgccttcatcgcccctgcgcagggtgcgatcaagcgcatg
gtggagcgcttcgcggaaaagggcatccccaccaaggtggccactcctgggtgggagccg
agccccggcgaggtcacgctctaccaggccttgtcccatgcgggtctggtgttcccaaag
gtacgcaagctgaaggatgctgaggcgctgccgctcgttgtcatcacggaaaccgatctg
acgggtaaccgtgtgggcgatattgcgggggcgaagcgtcgcccagcaaagcgccgcaac
cgcgtggatcccctcgcactcaagcagggcgactacgtggtgcatgagactcatggcatc
ggcaagttccttaagatggccgagcgcaccgtccaatccggtgatgagacctcccgccgc
gagtacatcgtgctggagtatgcggcgtccaaacgcggtcagccggccgaccagctgtgg
gtgcccatggattctttggatctactgagcaagtacaccggcggcgaagcgccgacgctg
tccaagatgggcggctcggattggaagaacaccaagaagaaggcgcgcgccgcagtgcgc
gagatcgccggggagctggtggagctttatgccaagcgccaggcagcacccggtcaccaa
tttggccccgataccccgtggcaggcggagatggaggataacttccccttcgtcgagacg
gaagaccaaatgctggccatcgatgccgtcaaggaagacatggaatccacggtgccgatg
gaccgcgtggtcgtcggtgatgtgggctacggcaagaccgaggtagccgtgcgtgcagcc
ttcaaggccgtgcaggacggcaagcaggtggcggtcctcgtgcccacgaccctgctggct
caacagcacgccgataccttccgcgagcgcatgcaaggtttcccggtggatatcgaggtg
ctctcgcgctttacttcggccaaggagtccaaggagattctcgccggtttggcggatggt
tccgtggatatcgttatcggcacgcaccgcctgctgcagaccggtgtgcagtggaagaac
ttgggcctcatcgtggtggatgaggagcagcgcttcggtgtggagcacaaggagcacatc
aaggcgctcaaggctagcgtggacgtgctcaccatgtccgcgacaccgattccgcgcacc
ttggagatgtccatggcgggcatccgcgagatgtctacgatcttgactccaccggaggac
cgtcacccggtcctaacctatgtgggtgcgtacgaggataagcaggtggccgcggccatc
cgccgcgagctgctgcgcgatggccaagtcttcttcattcacaacaaagtcgctgacatc
gagaagaaggcccgcgaactgcgggacctagtgccggaggcgcgcatcgtcgtcgcgcac
ggccagatgaacgaggacgtgcttgaacgcaccgtccagggtttctgggaccgcgaattc
gacgtcctggtgtgtaccaccatcgtggaaaccggcctggacatcgctaatgcgaatacc
ctcatcgtggaaaacgcccaccacatgggtctgtcccagctccaccagctgcgcgggcgc
gtgggccgctcccgcgagcgcggctacgcctacttcctctacccgaagggcgccacgctg
acggagacctcctatgaccgtctggccaccatcgcccagaacaacgatctgggtgcgggc
atggccgtggccatgaaggacctggagatgcgcggcgccggcaacgtgctgggcgccgag
cagtccggccacatcgctggcgtgggcttcgatctctacgtgcgcctcgttggtgaggct
gtggagaccttcaaggcgcttgcgcgcggggagacccccgtggtcacggacgaagggcca
aaggaaatccgcatcgacctgccggtggatgctcatatcccggagtcctacatcaactcc
gaacgtctccgcctggaggtttaccgcaagctcgcagcttccaaggagaatgcggatctg
gcacacgtggtggaggaaatgcaggaccgctacggccccgttccggagccagtggaacgc
ctgctcgcggtagcacgcctgcgccaccaggcccgccgggccggggtcagcgatattacg
gtgcagggcacgcgcattaaggtccacccggtggaattggcggattccaaacaggttcgc
ctcaagcgcctcttcccgggctcgaattaccgcgcggcggccaaggccattcagctcaac
ttccccaaggctggccgcaatgtcactgatcccaagctgcgagacattgaactcctgcag
tggatggcggatttcttggcgtcgatgttcgaactcgagcgcgtcgacgtcagcggtgct
aagactaaaaagaacgtcattagcgtaggagaaaaataa
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