Collimonas arenae: LT85_0936
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Entry
LT85_0936 CDS
T03512
Symbol
rrecQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
care
Collimonas arenae
Pathway
care03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT85_0936 (rrecQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
care03019
]
LT85_0936 (rrecQ)
03400 DNA repair and recombination proteins [BR:
care03400
]
LT85_0936 (rrecQ)
Enzymes [BR:
care01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT85_0936 (rrecQ)
Messenger RNA biogenesis [BR:
care03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LT85_0936 (rrecQ)
DNA repair and recombination proteins [BR:
care03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LT85_0936 (rrecQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AIY40094
UniProt:
A0A0A1F8T3
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All DBs
Position
1056125..1057960
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AA seq
611 aa
AA seq
DB search
MPNSAEASGSDPQALHILQTVFGYPSFRGQQAEIVSHVANGGDALVLMPTGGGKSLCYQI
PALLRDGVGVVISPLIALMQDQVDALAEVGVRAAFLNSTQTYEEAAQIERRVRSGDLDLV
YVAPERLLTPRCLELLESSKIALFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVPRIA
LTATADQQTREEIAMRLQLEDGARFVSSFDRPNIRYQIVEKANGRKQLLDFIESEHVGDA
GIVYCLSRKKVEETAEFLVQQGIAALPYHAGMEYTQRTKNQGRFLREDGIVMVATIAFGM
GIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGGPANAWMAYGLQDVVQQRRMIDESEAG
ETFKRVQGVKLDAMLGLCETLHCRRVRLLDYFGQGSERCGNCDTCMNPPVSFDATVVVQK
LLSTIYRVDQRFGAMHVMDVLRGIDSDKIKQWRHDQLSTFGIGSDRSEAEWRAILRQSIA
LGLITVDHEAYSALKLTDAARPVLKGEYPVQLRQYQKPVKQKRSGGKSKGYVETDLSTLE
QAIFEKLRWWRVETARKHNVPAYVIFHDATMREIAKAQPVSLDDLRGVSGVGEKKLETYG
TEIVELIAEFV
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgccaaattcagcagaagcatcaggttccgatccgcaagcacttcatatactgcaaacg
gtattcggttatccctcgttccgaggccagcaggctgagattgtcagccatgtagccaac
ggcggggatgcgctggtgctgatgccgaccggcggcggcaagtcgctctgctatcagatt
ccggccttgttgcgggatggcgtcggcgtggtgatttcgccgctgatcgcgttgatgcag
gatcaggtcgacgcgctggccgaagtcggtgtgcgcgcagctttcctgaattctacccag
acctacgaagaagcagcgcagatcgaacgtcgcgtgcgcagcggcgatctcgatctggtc
tatgtggcgccggaacgcttgctgacgccgcgctgcctggagttgctggaatcgtcgaag
atcgctttgtttgccatcgacgaagcgcattgcgtgtcgcaatgggggcatgatttccgg
cccgaatacatcaagctgtcgatcttgcacgaacgtttcccgcaagtgccgcggatcgcc
ctgacggcgactgccgaccagcagacccgcgaagaaatcgcgatgcggctgcagctggaa
gacggcgcacgttttgtatcttccttcgaccgccccaacatccgttatcagattgtggaa
aaggccaacggccgcaagcagctgcttgatttcatagaaagcgaacatgtcggcgatgcc
ggcatcgtctactgtctgtcacgcaagaaggtggaagaaactgctgaattcctggtgcag
caagggatcgccgctttgccgtatcacgctggcatggaatacacgcaacggaccaagaat
caaggtcgcttccttcgcgaagacggcatcgtgatggtcgccactatcgccttcggcatg
ggcatcgacaaaccggatgtgcgtttcgtcgcccatctggacctgccgaaaagcatcgaa
ggttattaccaggaaaccggccgtgcaggtcgtgacggcggtcccgccaatgcctggatg
gcctatggtttgcaggacgtggtgcagcaacgccgcatgattgatgaatcggaagccggc
gagacgttcaagcgggtgcagggcgtcaagctggatgcgatgctcggtctgtgcgaaacc
ctgcattgccgccgcgtacgcttgctggattacttcggccagggttcggaacgctgcggc
aattgcgatacctgcatgaatccgccggtgtctttcgatgcgacagtggtggtgcaaaag
ctgctgtcgacgatttaccgggtcgatcagcgttttggcgcgatgcacgtaatggatgtc
ttgcgcggcatagattccgacaagatcaagcaatggcggcacgatcagctttccactttt
ggcatcggcagcgatcgcagcgaagcggaatggcgggcgattctgcggcaatcgattgcg
ctcggcctgatcacggtcgaccatgaagcctacagcgcgctcaagctgaccgacgccgca
cggcccgtgctgaaaggcgagtatccggtgcaattgcggcaatatcagaaaccggtcaag
caaaaacgcagtggcggcaaatccaagggttatgttgaaaccgatttgtcgacgctggag
caagccattttcgagaaattacgctggtggagagtggaaacggcacgcaagcataatgtt
ccggcctacgtcattttccacgatgcgacgatgcgcgaaatcgccaaggcgcagcctgtg
tcgctggatgatttgcgtggagtaagtggcgtcggtgagaaaaagctggagacttacggc
acagagatcgtcgagctgattgcagaatttgtataa
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