Collimonas arenae: LT85_2233
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Entry
LT85_2233 CDS
T03512
Name
(GenBank) Fibronectin type III domain protein
KO
K20276
large repetitive protein
Organism
care
Collimonas arenae
Pathway
care02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
care00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LT85_2233
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_7
CarboxypepD_reg
fn3
Glucodextran_B
Big_13
SpaA
SdrD_B
FixG_C
Motif
Other DBs
NCBI-ProteinID:
AIY41391
UniProt:
A0A0A1FA45
LinkDB
All DBs
Position
2474029..2480277
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AA seq
2082 aa
AA seq
DB search
MAALTALSMLAASMPVNAGQLRIDGGVVVKFGADAGMVVRDQLLNGQGVTFTSQNDDAAG
GQSNTLPQTPAAGDWRGVRMEKSSAVNPNASTQLNDLTLRYAGASGANPGAALTLRGISP
ALQYLQVTDSTTGLRLIDAASPAITGASFLRNGVGIDADGNSAPTVVSTQFSQSANLAIL
NRTPATIIQAGSNWWGHASGPKDLTGNPQGQGDGVSSGVNYSGYLSSAPLLNPSVRLAAP
AAYYQQRNVALEISCVNATEYRIAEGSAFVGIPFQALANGRAALDYTVSAGDGNKPVTVQ
FRNASGTITTATLAGGVLIDTQAPQLAIVNPAADSVISKPIVVEATATDASGINRVEFYL
DNQLVATRTAAPYTYNWNTDSSTEGSHKILVIAYDQVGRNTEQSLAVTLSHAPVTPDTEG
PQLSNIKADGVALANGAVLTRNANITLDASDRSGVSRVELLLDGQLIATASGSGSYSAAL
NLAAAANGAHILAIRAFDSLNNVTSNSYSISVSHAVPDAPQWLNPASGTTTRTAALALNG
SAQAGSNIQVLVNGKAAGAVVVSGTDGRFVSNVTLNPGANQIQATASDQYGSSALSAVLL
VTLDTNVPSSPGNLGATAQAQGKVKLVWSRSSDVNVTGYDVYRATTAFNGIAEAVKINSS
ALSINSYDDLPPQDGAWYYRVVAVNSAGTPSLPSNQVQIVSDSIAPKALSIVYKPTGKVD
PVSGRTGQGRIDLIVTVSEALLATPYLSIVPQGGAPIPVDLLKTGDTTYSGNFMVDASTP
SGVANALFSARDAVGNRGTDIDVGATLKIDTEGPALSGIVLTPSSPIKNDKAQLVQATLT
FSKAPKTMPKVSYLLSGPVRSPEAVSLNQVNPTTWQASFTLASDAGLASPEMLVFSSQAT
DDLDNISNKVNAFNRFQVYQGNLPPLNVPFGFSAKAQPGGKVKLSWQAVADASSYQLYRQ
GPGQNALQTLTRASGEAYVDQTTQDGAYKYAIATVRQSNGQESFSVQSAAVDVLVSATAP
GSPQNLTLALTGQGIKASWQPPLASVVDSYNLYRAGGTSITTIEGLTPLKSGIKAPLALD
PSPSSTQGAYVVTALDAAGNESAISNSAYLNASLLPVTNLKVEQLGNELPVISWNAPNGN
VAGYLVYVGPDASKTKLTPRPITSLNFTDTGYTSGERRYTIATVDANGVEMPRSLTLPNV
VTQIASGLPIKRGIMNKLQVQVVNTSAGAQDNVRVTVRLPVNKDATQFQIHKSEVFTLAP
NETRLVTVVVGGYADLPSQAQAQVGVEISPNDGELVRLSHNDSITVGDSALVVGMATDEF
TRGGIGKLKLTIENTTEVDIELLTATNNGSADSSELRFKILDADGNVLATQAYKQVFGAN
VVTLTNGQTVARIPAGSSYTSDVFNLSVPASSPNSIRVRLDVDQLRYHSGQDDQILISGR
GSEKTVSLVDSAYVGEVTKVNPISSFGDQDILIGGRAFDRKTNAALPNTRLKLILNQQGF
ERTFSVLTDASGEFNYNFKPTVTDAGLYKVSAVHPDITDRPEQKAFSINRVTVSPTPYKL
DIPRNYPFTIPFTAKAGVGTVATNLRLILDAGSQSTGQLPLGVIAQLSAPVSLAEKQTLN
IPVVFSANNDAQPSGNLILNVMSDDHPSSPIGQVKIDYTLSEAKPFLITIPSFVQTGMAQ
GGSDIESVVVENKGLQEALNLQFSFTKADGSAAPSWASIASQANGTLAIGEKRSIDLAFT
PPAGTQESVYEFKLKVQGDNVPQQTLNVYVSLTQSGKGNVLFKASDLYTATVDKQGKLIP
GLANASVTLQNEDVITVTQELVTDSLGEALFQNLPSGRYTYRAKADNHQELGGRLQIKPG
ITTNQSVFLDYNLIKVEWSVSEVSIQDRYDVTLNATFETDVPAAVVVMQPPSINLPKMNS
GDVYYGELALQNYGLIRADNVRQKLPQSDTFFRYEFLVEVPPVLNAKQRVTIPYRVIALQ
ALDAAASTGSASGGGCYNYSSTTSVSCQFTCANGAESSCGASASWFAVSNSSCPAGGGVG
GGGAGGGFGGGFGGGGTGTPATPISIKGKKCVKVPDGKGGDC
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcgctgaccgcgttgtccatgctggcggcatcgatgcctgtcaatgcaggtcag
ttgcgcatcgatggcggtgtggtcgtcaaattcggtgctgacgccggcatggtggtgcgc
gatcagttgttgaacgggcaaggggtcacgttcaccagtcagaacgacgatgctgccggc
ggccagagcaataccttgccgcaaacacccgcagccggcgactggcgaggcgtgcgcatg
gagaaatcgtccgccgtcaatcctaacgccagcacgcagctgaacgatttgacgttgcgc
tatgccggcgcatctggtgccaatcctggcgcggcgctgacgctacgcggcatcagcccg
gcgctgcaatacctgcaagtcacggacagcacgacaggcctgcgtctgattgatgctgct
tcgccggccatcacaggcgccagttttctgcgcaacggcgtcggcatagatgccgatggc
aatagcgcgccgacagttgtcagtacgcagttttctcaaagcgctaacttggcgattctg
aaccggacgccggctaccatcatccaggccggcagtaactggtggggccatgccagcggt
ccgaaagacctgactggcaatccgcaagggcaaggcgatggcgtgtccagtggtgtgaac
tacagcggctatctttcatcggcgcccttgcttaatccatcagtacgcttggcggcaccc
gctgcgtactaccagcaacgcaacgtcgcattggaaatctcttgcgtcaatgccaccgaa
taccgcatcgccgaaggcagcgccttcgtcggcataccgttccaggcgctggccaacggc
cgtgccgcgctcgattacacggtttccgccggcgacggcaacaagccggtcacagtgcaa
ttccgtaatgccagcggcaccatcacgacggcgacgctggccggcggagtattgatcgat
acccaggcgccgcagctggcgattgtcaatccggccgccgacagcgtgatcagcaagcct
atcgtagtcgaagcaaccgccaccgatgcctctggcatcaaccgcgttgaattctatctg
gacaaccagttggtggcgactcgtaccgccgcgccttacacttataactggaacaccgat
agcagcaccgaaggcagccacaagatactggtgattgcttacgaccaggtcggccgcaat
accgaacaaagcctagccgtcaccctgtcgcatgcaccggtgactccagacacagaaggg
ccgcagctgagcaatattaaagcggatggcgtggcgctggcgaacggcgcagtactgacg
cgcaatgccaatatcacgttggatgccagcgaccgcagcggagtttcgcgggttgagctg
ttgcttgacggccagctgattgcaaccgccagcggctcgggcagctacagcgctgccctc
aatttggccgctgccgccaatggcgcgcatatcttggcgatccgcgccttcgattcgctc
aataacgtcaccagcaacagctacagcatcagcgtgtcgcacgccgttccggatgcgccg
caatggcttaaccccgccagcggcacgaccacccgcacggccgcgctggcattgaacggc
agcgcacaagccggtagcaatatccaggtcctggtcaacggcaaggccgcaggtgcagtc
gtcgttagtgggacggacggtcgttttgtcagcaacgtgacgcttaatcccggcgccaac
cagatccaggccacggctagcgatcaatacggcagcagcgcgttgtctgccgtattgctg
gtaacgctcgacaccaacgttcctagcagtcccggcaaccttggtgcgaccgcgcaggcc
caaggtaaagtcaagctggtatggagccgttctagtgacgtcaacgtcaccggatatgat
gtatatcgcgccacgacggccttcaacggcattgccgaagcggtcaagatcaacagcagc
gcattgagcatcaacagctatgacgatctgccgccacaggacggtgcttggtactatcgg
gtagtcgccgtcaacagtgctggcacaccgtcattgccgtccaaccaggtacagatcgtt
tccgacagcatcgcgccgaaggctctatccattgtgtacaagccgacaggcaaggtcgat
ccggtcagcggccgtaccggccagggccgtatcgacctgattgttacagtcagtgaagcc
ttgctggcgacgccgtacctgtcgatcgtaccgcaaggcggcgcgccgattccggtagat
ctgctcaaaaccggcgacaccacctacagcggcaatttcatggtcgacgccagcacgccg
tcgggcgtggcgaatgccttgttctcggcacgcgatgcagtgggaaatcgcggcaccgat
attgatgttggtgcaacgctgaagatcgataccgaaggtcctgcgctatccggtattgtg
ctgacgccttcgtcgccaatcaaaaacgacaaggcgcaacttgtgcaggcgacattgact
ttcagcaaagcgccgaagaccatgccaaaagtgagttacctgttgtctgggccggtccgc
tcaccggaagcggtatcgttgaaccaggttaatccaaccacctggcaggccagttttact
ctggctagcgatgctggtttggccagtcctgagatgctggtctttagcagccaggcgacc
gatgacctagataatatttccaataaagtaaacgcattcaatcgcttccaggtgtatcaa
ggcaatctgccgcctctgaatgtcccgtttggcttcagcgccaaagcgcagccgggcggc
aaggtcaagctgagctggcaagcggtggctgacgccagcagttatcagctgtaccggcaa
ggcccgggccagaacgcattgcagacattgacgcgtgctagcggcgaagcctatgttgat
cagactacacaagatggtgcttataaatacgccattgcaaccgtgcgtcaatcgaacggc
caggaatcgttctcggtgcaaagcgcagcagtcgatgtgctggtaagcgcaactgcaccg
ggttcgccgcaaaacctgacgctggcgctgaccggccagggcatcaaggctagctggcaa
ccgccgctggcgagcgtggtcgatagctacaatctgtaccgcgccggcggcaccagtatc
accacgatcgaaggcttgacgccgttgaagtcaggcatcaaggcaccgctagcgctggat
cctagtccgtcgtcaacccaaggggcgtatgtagtgaccgcgctggatgcggcaggcaat
gaatcggcgatttccaactccgcctatctcaatgccagcctgctgccagtgacgaatctc
aaggtggagcagctgggtaacgaattgcctgtgattagctggaatgcaccgaacggcaac
gttgccggttacctggtctatgtcggccctgatgccagcaagaccaagttgacgccgcgg
ccgatcactagcctcaactttaccgataccggttacaccagcggcgagcggcgctatacg
attgccacggtggatgctaacggcgtcgagatgccgcgcagcctgaccttgccgaatgtg
gtcacgcaaatcgcttccggcctgccgatcaaacgcggcatcatgaacaagctgcaagta
caagtagtcaacacctcggccggcgcccaagacaatgtacgggtaaccgttcgtctgccg
gtcaacaaggacgctacgcaattccagattcataaatcggaagtctttacgctcgcgccc
aatgaaaccaggttggtgaccgtggtggtcggcggctatgccgatttgccgagccaggcg
caggcacaagtcggggtcgagatcagtcctaacgatggcgaactggtccgcctcagccac
aacgacagcattaccgtcggcgacagtgcgctggtggtgggcatggcgaccgatgaattc
acgcgcggcggcatcggcaaactgaagctgaccattgagaatacgaccgaagtcgatatc
gagctgttgactgccactaataatggcagcgcagattcgtcggaactgcgtttcaaaatt
ctcgatgcggacggcaacgtattggcaacccaggcatacaaacaggtattcggcgccaac
gtggtgacgctgaccaacggccagaccgtggcgcggattcctgccgggtccagctatacc
tcggacgtgttcaacctgagtgtgccggcgtccagcccgaacagcatccgggtcaggctc
gacgtcgatcagctgcgttatcacagcggccaggacgaccagatcctgatcagcggccgc
ggctccgagaagaccgtgtcgctggtcgacagcgcctatgtcggtgaagtcaccaaggtc
aacccgatcagctcgttcggcgaccaggacatcctgatcggcggccgtgcgttcgaccgc
aagaccaatgccgccttgcctaatacacggctcaagctgattctgaaccagcagggcttc
gagcgcaccttcagcgtgttgaccgacgcatccggcgaattcaactacaacttcaagccg
accgtcactgatgcaggcttgtacaaggtgtcggccgtgcatcctgatattacggatcgt
ccggagcagaaggcgttcagtatcaaccgcgtgacggtcagcccaacgccgtacaagctc
gatattccgcgcaactatccgttcacgatcccgttcacggccaaggctggcgttggcact
gtcgcaaccaacctccgcttgatacttgatgccggtagtcagtcgaccgggcagttgccg
cttggtgtcatagcgcaattgtccgcgccggtatctttagcagaaaaacagaccctcaac
attccagtggttttcagtgcgaacaacgacgctcagccttccggtaatttgattcttaat
gtcatgagtgacgatcatccaagctccccgatagggcaggtcaagattgactacaccttg
tccgaggcaaagccgttcttgatcaccatcccgagctttgtgcaaacaggtatggcacaa
ggcggtagcgatatcgaatcggtggttgtagagaacaagggattgcaagaagcgctgaat
ctgcaattctcgttcaccaaggccgacggttccgctgcgccaagctgggccagcatcgct
agccaggccaacggcacgctggcaatcggcgagaagcgttcgatcgacttagccttcaca
ccgcctgcaggcacgcaggaaagcgtgtacgagttcaagctcaaggtgcaaggcgacaac
gtgccacaacagacgctcaacgtttacgtcagcctgacgcaaagcggcaagggcaacgtg
ctgttcaaggccagcgatctctataccgccacggtcgacaaacaaggcaagctgattcca
ggcctggcgaacgccagcgtcaccttgcagaacgaagatgtcatcacggtgacgcaagag
ctggtcaccgacagtctgggcgaagcactgttccagaacttgccatcaggccgctacacc
tatcgcgccaaggctgacaatcatcaggaactgggcggcaggttgcagatcaagccgggt
atcactacaaaccaatcggtgttcctggactacaacctgatcaaagtggaatggagtgtc
agtgaagtgtcgatccaggatcgctatgacgttactctcaatgcgacgttcgagacagat
gtcccggcggcagttgtagtgatgcagccacccagcatcaatttgccaaaaatgaattca
ggcgacgtgtattacggtgagcttgccctgcaaaattatggtttgatccgtgccgacaat
gtgcgtcagaagctgccccagagcgacacatttttccgctatgaattcctggttgaagtt
cctcctgttctcaacgccaaacagcgcgtgacgatcccatatcgcgttattgcgctgcaa
gcactggacgctgcggcaagcaccggaagtgccagtggaggcggttgctacaactatagc
agcacgacgagtgtgagttgccagttcacctgtgccaacggtgctgagtcttcttgcgga
gcttcggcctcatggtttgctgtcagcaatagttcctgccctgccggcggcggggtgggg
ggcggcggagccggtggtggctttggcggtggctttggcggtggcggtacaggcacccca
gccacgcctatcagtatcaaaggcaagaagtgtgtaaaggtaccagatggcaagggaggc
gactgctaa
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