Collimonas arenae: LT85_2438
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Entry
LT85_2438 CDS
T03512
Name
(GenBank) Fibronectin type III domain protein
KO
K20276
large repetitive protein
Organism
care
Collimonas arenae
Pathway
care02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
care00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LT85_2438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Autotransporter
SprB
Big_9
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
AIY41596
UniProt:
A0A0A1FAM2
LinkDB
All DBs
Position
2728297..2734851
Genome browser
AA seq
2184 aa
AA seq
DB search
MAWFAHLLRGFAYAAIFGWSSFAYAFSPSTECPPIQSITVASGGTSTTDLSGCSVFGLDG
MPTAPSHGTLSDMNPTTGNGDSKVIYVNNGDGALSDSFVVLDDLNGTITFTVTVLPAASP
ITVTPATLPAPSIGNAYSQSLSASGGVAPYTYSLSSGSLPAGLSISAAGLISGTPTAAGA
FTFTVGVLDSTTPTALSTTKTYSMTVAVPTMVLAPASPPAGTISLPYSQQMSTTGGTAPY
SYAIQVGLGTLPPGLTLSPSGLISGTPTTAGSSTFSLKYTDSTSGTGPFSQAQNVTIVIN
ASPVIVITPTVLPAATVAAAFSQSLSASGGTAPYTFAISAGALPAGLTLSSAGLLSGTPT
AGGTFNFTVRGTDQSSFSGTQAYTLTVNAPTIAITPTTLPAATVATAYSQTAVASGGTAG
YTYAISAGALPAGVTLSGGGTISGTPTAGGTFNFTVRATDSSTGTGPYIGARAYSMTVNA
PTIAITPVSLPAMTVASSFTQNLTASGGIASYTYTVSAGALPNGLTLAANGTLSGTPTVS
GPFNFTVTATDSSTGSGPYTGSRAYSVNVSAGLPVTGAVSVTVAYGSSANPVTLNLSGGT
ATSVAVASAAAHGTATASGTSITYTPTSGYAGGDSFTYTATNTAGTSSPATVTVTVSSPT
LTITPSGSWSVTDGGSYSQTLTWAGGAAPYSGITVTGLPAGLSVTATSSTGATISGTPTA
VGSFTVTASATDSSTGTGPFTKSQGFTLTVAAPTVSLTPPGPTLTPSYGSAFSQAFTASG
GVAPYAYVLTGSLPSGLSWNAATATLSGTPTQSGSFPISVSATDHSTGTGAPFSTSVNYT
LTVSAPTIAISPVSAPGGAIGQSYSTTISASGGVAPYSFTISAGALPSGVALNGATGALT
GTPTAAGSFNFTVNASDANSFSGTRAYTVAIGAPGMTLTPASLPAAAVATAYSAAFSAGG
GTAPYTYALTAGSLPSGISLNTATGVLSGTTVQAGSFPITVRATDSSTGAGAPFTAQGSY
TLVVAAPTISLAPSSVSGGSVATSYAAVISASGGVSPYIYSISSGSLPTGVTLNASTGAV
SGTPTAAGTFNFTVRAQDANSFSGVQSYSLAIAAATVTLNPATLPGATAEAAYSTTLVAG
GGTAPYTYALTAGSLPSGISLNAATGVLSGTTVVSGSFPITVRATDSSTGTGAPFNASRS
YTLTVAAPAISLAPSSVAGGTVAASYAASISASGGTAPYTYSVSAGALPAGISLNTASGA
LSGTPTAAGTFNVTVKALDVNGFNGTQAYSLVIGSATLTLNPATLPNPTAEAAYSATLTA
GGGTAPYSFAVSGGALPTGLTLNAATGVLSGTTNLSGTFNVTISATDSSTGVGAPFVASH
AYVLTVGAPNITLTPSTLVGAKASVAYSQQFTASGGIAPYAYTISAGSLPAGLALNAATG
LLSGTPTAAGSFTFTVRATDAQNFTAQQAETLSVAQAQPVAVNDSASTPANQPVTVNVTA
NDSGPITSIAVSTPPAHGSAAVSGLNVVYTPAANYFGSDSLSYVATGPGGSSAPATVTVT
VTALAVPVAVAQNATILAGQPVTLHGASGASGGPFTAVAIVSPPSVGTAAVSGTDIIYTS
VIGSSGDIKFSYTLANAFGVSAPVTATVSVNPMPVVGAHSATVAAGAAVSVDLMAGASGG
PFTAANLVTVSPTAAGSAVIRDVGSAGKPSYQMTFTASSKFAGAAAISYTLSNAYATSAP
GTVTVTVTARRDMSTDPEVIGLLSAQADSARRFASAQISNFTRRLESLHGDGWGTSGFGV
SLTPPSAPTGRPGSGTEAAPWLSADVDRMYGSPLQPNMRKVGWMPQAGGGQGGSNYGGGT
GSAFGSGSGAASGSGTGNGPVLAANDTQSTITGLPDLPARQGNSKQPLSLWMGGAVDFGQ
QYVNGHQAGFRFHTDGVSIGGDYRINDFATFGIGGGFSRDSSDVGNNGTKSTAESVVGAM
YGSLRPAKDVFIDGVLGYGTLNFNSNRYITGDGGFATGLRHGDQVFGAIVSGVEFHREGW
MWSPYGRLELMSATLDQYTETASGLNALTYFKQTVRTTSGSLGVRAEGQYLTSIGTWVPR
ARVEFRHQFQGQDDAGLAYADLASAGPAYIVHTTSQDTGNWFAGIGARLVMRNGVMFTID
YNSNINVGNGRSQSIMFGLEVPLQ
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
ttggcgtggtttgcccaccttctgcggggctttgcctatgcggcgattttcggctggtcg
agttttgcctacgccttcagccccagcaccgaatgtccgccaattcagtcaataacggtt
gcctccggcggcacctcgactaccgacttgtccggctgttcggtattcggcctggacggg
atgccgaccgcgccttcgcacggcacgctgtcagacatgaatccaaccaccggcaatggc
gacagcaaggtcatatacgtcaacaatggtgacggtgcgctctccgacagttttgtcgtg
ctagacgatttgaatggaacaatcaccttcacggtcacggtcttgccggcagcctcgccg
attacggtaacgccagccaccttgccggcgccatccatcggcaacgcctatagccagagc
ctgagcgcctcaggcggggttgcaccgtatacctactccctctcatcaggcagcctgccg
gccggcttgagcatatccgcagccggcttgatttccggcacgccaacggccgcaggggca
tttacgttcaccgtaggcgtgctcgattcgaccactccgacggcattgagcacgaccaag
acctattcgatgacggttgccgttccgacgatggtgctggctcccgccagtccgccggcg
ggaacgatatcgctgccgtacagccagcaaatgagcacgaccggcgggaccgcgccctac
agctatgcgatacaggttggcctgggaacgctgccgccgggattgaccttgtcgcccagc
ggcctgatttcgggaaccccgactactgccggcagttctactttctcactcaaatacacc
gatagcacctctggcaccgggccattttcccaagcacagaatgtgacgatcgtgatcaac
gcgtcgccggtgattgtcatcaccccaaccgtgctaccggccgccacagtcgccgcggcg
tttagccaaagcctgtctgccagcggcggcactgcgccgtatacctttgcaattagtgca
ggggcgctgcctgctggactgaccttatcaagtgctggcctcttgtcgggtacgccaacc
gcaggcggtactttcaatttcacggtcaggggaactgatcagagctcctttagcggcacg
caagcctatacgctgacggtcaatgcgccgaccatcgcgataacgcctacgacattgccc
gcggcgaccgtcgctacggcgtatagccagactgcggtagccagtggcggtacagccgga
tatacctatgcgatctctgccggcgctttgccggcgggggtgactttgtctggcggcggg
acgatatccggtacgccaactgcgggcggcacctttaattttacggtgcgcgcgacggat
agttcgaccggcaccggcccatatattggcgcgagggcttattccatgacggtcaatgcg
ccgaccatcgcgatcacccccgtcagcctgccggccatgacggttgccagcagctttacg
caaaacctgacggccagcggcggcattgcctcttacacctatactgttagcgccggcgca
ctgccgaatggattgacattggctgcaaacggaaccttgtctggtacgccgactgtatcg
gggccattcaatttcacagtcacagcgaccgatagttcgacaggcagcggcccgtataca
ggttcacgggcttattcggtcaacgttagtgccggtttgccggtgactggcgccgtcagt
gtgacagtcgcttacggcagctccgccaacccggtcaccttgaatctgagcggcggcaca
gccacctcggttgcggttgcatcggcggcagcacacggcactgccaccgcttctgggacc
agcatcacttacacaccaacttcgggatacgccggtggcgattcgttcacctacacggca
accaacacggccggaacttccagtccagctacggtaacggtaacggtctcgtcgccgacc
ttgacgattacgccttcgggttcatggtctgtgacagacggcggcagctatagccaaacc
ttgacctgggccggtggcgcggcgccttacagcggtataacggtcaccggcttgccagcc
ggattgtccgtcacggcgaccagttctaccggagcgacaatttccggcacgccgaccgcc
gtcggcagtttcacggtcacggcttctgccaccgatagcagcaccggcaccggtccattt
acgaaatcgcagggttttacattgacggtggctgcacccaccgtcagtttgacgccgcct
ggtccaaccttgacgccaagctacggcagcgcattttcgcaagctttcacggctagcggc
ggtgttgcgccctatgcgtatgtgttgactggcagcctgccgagcggtcttagctggaat
gcggcgacagcaacactttccggtaccccgacccaaagcggcagcttcccgatctcggtc
agtgcgaccgaccactcgaccggtaccggtgcgccgttcagcacatcggtcaactacaca
ttgacggtcagcgcgccgaccatcgctatctcgccggtcagcgcgccgggtggcgctatt
ggccaatcgtattcgactaccatcagcgccagcggcggcgttgcgccctatagctttacg
atatcggcaggcgccttgccatcaggcgttgcgcttaacggcgcaaccggcgctctgacc
ggaacgccgacggctgcaggtagcttcaacttcaccgtgaacgccagcgacgctaacagc
tttagcggaacccgtgcatataccgttgcgatcggcgcgcctggcatgacattgacgccg
gcatcgcttcctgctgcggcggtcgcgacggcttatagcgcggcctttagcgccggcggc
ggtactgcgccttacacctatgccctgaccgcaggcagcttgccatcggggatcagcctg
aataccgctaccggcgtactttccgggaccacggtccaggccggcagtttcccgattacg
gtgcgcgccaccgacagcagcaccggggcgggtgcgccatttacggcgcaaggcagttat
accttagtggtcgcggcgccaaccatcagcctggcgccaagttcagtgtcgggcggttcc
gtggcgaccagctatgctgccgtcatcagcgccagcggcggcgtatcgccttatatttac
agtatttccagcggctcgttgccgacaggagtaacgctgaatgcatcgactggcgcggtg
agcggcacgccgactgcggcggggacatttaatttcactgtgagggcgcaagacgccaat
agcttcagtggcgtccagtcctatagcctggccattgctgcggctaccgtgaccttaaat
cccgcgacgctgcccggcgccacagcggaagcggcgtacagcaccacgctggtcgccggc
ggcggcactgcgccttacacttacgcgctcactgctggctccctcccgagcggcatcagc
ctgaatgctgcgaccggcgtattgtcggggaccaccgtcgtgagcggcagtttcccgatc
actgtgcgcgctaccgatagcagcaccggaaccggggcgccgttcaacgcctcaagaagc
tatacgttgacagttgccgctccggcgatcagccttgcgccgagcagcgtggcaggcggt
accgttgccgccagctatgcggccagcatcagcgccagcggcggcaccgcgccttatacc
tacagcgttagcgcaggtgcgttgccggcagggataagcctgaataccgccagtggcgcg
ctgagcggcaccccgactgccgcaggcactttcaacgtgaccgttaaagcactcgacgtc
aatggtttcaacggcacccaggcatatagcctggtgattggttcggcgacgctgacgctc
aatccggccacgctgcccaacccgacagccgaagctgcctatagcgccacattgacggca
ggcggcggtactgcgccgtacagctttgcggtcagcggcggtgccttgcccaccggattg
acgcttaatgctgcaaccggtgtgctgtccggcaccaccaacctgagcggcacgttcaac
gtgacgattagcgcgaccgatagcagcaccggcgtcggtgcgccattcgtggcttcacat
gcctacgtattgactgtcggtgcgccgaatattactttgacgccgagtacgctggtcggc
gccaaggccagcgtcgcgtatagccagcagttcacggctagcggcggtatagcgccgtat
gcctacacgatcagcgctggcagtttgccggcaggactggcattgaatgcagctaccggc
ctgctgagcggcacgccgacggcggccggcagctttactttcaccgtgcgcgccaccgat
gcgcagaactttacggcgcagcaagcggagacattgagcgtcgctcaggcacagccggtg
gcggtgaacgatagcgccagcaccccggctaaccagccggtgacggtgaatgtcacggcc
aacgacagcggtccgattacgagtattgcggtcagtacgccgccagcccatggcagtgcg
gctgtgagcggcctgaatgtggtctacacgccagccgctaattacttcggcagtgatagt
ttgagttatgtcgccacaggcccgggcggtagttccgccccagctacggtaacggtgacc
gtgacggcgctcgcggtgccggttgcggtagcccagaatgccactatcctggcgggccag
cctgtgacgttgcatggcgctagcggcgctagcggcgggccatttaccgcagtcgcgatt
gtcagtccgccgagcgtcggcaccgccgccgtcagcggcaccgacatcatctatacctcg
gtaatcggcagcagcggtgacatcaagttcagttacaccctggccaatgcctttggtgta
tctgctccggtgacggcgaccgtcagtgtcaatccgatgccggtagtcggcgcccatagc
gccacggtggctgccggtgcggcggtcagcgtcgatctgatggcgggcgccagcggcggc
ccattcacggccgccaatctggtgacggtgtcgccaacggctgccggcagcgcggtgatc
cgcgatgtgggcagcgctggcaagccgtcgtatcagatgacatttactgcatccagcaag
ttcgccggcgcggcggcaatcagttacacactgagcaatgcctacgcgacttcagcgcca
ggtactgtcacagtgaccgtcacggcaaggcgcgacatgtcgaccgatccggaagtgatc
ggcttgctgtcggcgcaggcggatagcgcaagacgcttcgccagcgcgcagatttccaac
ttcacgcggcgactggaaagcctccacggcgacggctggggtacttccgggttcggcgtc
agcctgacgccgccgagcgcgccaaccggccggccgggttccggcacagaagccgcgcct
tggctaagcgctgatgtcgaccgcatgtatggctcaccgctgcaacctaacatgcgcaag
gtaggttggatgccgcaagcaggaggcgggcagggcggtagcaactatggtggcggcacc
gggtcagcttttggtagcggatcaggtgcggctagcggtagcggcaccggcaacggtccg
gtattggcggccaatgatacgcagtcaaccatcaccggcttgcccgacctgccggcgcgt
cagggcaattctaaacagccgttgtcattgtggatgggcggggcggtggactttggccag
cagtatgtcaatggtcaccaggccggtttccgtttccacaccgatggcgtgagtatcggc
ggtgactatcgcatcaacgacttcgccaccttcggtatcggcggcggatttagtcgcgac
agcagcgacgtcggcaataacggcaccaagagcaccgcagaaagcgtggtcggtgcgatg
tacggcagcttgcggccggcgaaggacgtattcatcgacggcgtactgggctacggcacg
ctgaacttcaattccaaccgttacattaccggcgacggcggtttcgccaccggcttgcgc
catggcgaccaggtattcggcgcgattgtcagcggcgtcgaattccatcgcgaaggctgg
atgtggtcgccatatggccggttagagttgatgtctgccacgctggatcaatatacggaa
accgccagcgggttgaatgcgctgacttacttcaagcagaccgtgcgcaccaccagcggc
tctttgggagtacgtgcagaaggccagtacctgaccagcatcggcacctgggtgccgcgg
gctcgcgttgagttccgtcatcagttccaggggcaggatgatgccgggctggcgtacgcc
gacctggcatcggcggggccggcgtatatcgtgcacaccaccagccaggataccggcaac
tggttcgccggcatcggcgcaagactggtgatgcgcaacggcgtgatgtttaccatcgac
tacaacagcaacatcaatgtcggcaacggccgcagccagtcaatcatgttcggattggaa
gtgccgttgcaataa
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