Chryseobacterium arthrosphaerae: EGY05_23300
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Entry
EGY05_23300 CDS
T05746
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
carh
Chryseobacterium arthrosphaerae
Pathway
carh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGY05_23300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carh03021
]
EGY05_23300
03019 Messenger RNA biogenesis [BR:
carh03019
]
EGY05_23300
Transcription machinery [BR:
carh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EGY05_23300
Messenger RNA biogenesis [BR:
carh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGY05_23300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
Rho_N
Motif
Other DBs
NCBI-ProteinID:
AYZ14671
LinkDB
All DBs
Position
5097276..5099093
Genome browser
AA seq
605 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSNENDKIFAILDFQASNPKVAKDYFNATETA
SVNTEEAPAEKPAKAPAKKAAPKKAPAAKPKTTAKTAAEPKVEEKVEEKTPVSEEIKPEE
PKAETAAPAEEAQVAQTKKKRKRVSTNAGNAEVSTEKTETPKNTESQEPAQAEEKPNTPP
QQQANRPQKGHNHPQNSGNQHKNQNQNQHQHQNQNQNRHSEKAEEQNDHKKEFNFDGLVS
IEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTGDTVKGIVRLPKEGEKY
FSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPQEKFNLAGSGSTVSTRIVDLFAPIGKGQR
AMIVAQPKTGKTMLLKDIANSIASNHPEVYMMVLLIDERPEEVTDMERSVNAEVIASTFD
EAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGVDANA
LHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANRR
IYPAIDLVSSSTRRDDLLLDEVTSQRMWILRKYLSEMNPVEAMEFVDKNIKGTLNNEEFL
MSMNK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaag
gatttaggcgttaaagttgcaagaaacagcaatgaaaatgacaagatctttgctattctt
gactttcaggcttccaaccctaaagttgcaaaagattatttcaacgccacagaaaccgcc
agtgtaaatactgaagaggctccagcagaaaaacccgctaaagccccggcaaaaaaagct
gccccgaaaaaagccccggcagccaagccaaaaacaactgctaaaacagcagcagaaccg
aaagtagaggaaaaagtagaagagaagacaccggtttctgaagaaataaaacctgaagag
cccaaagctgaaaccgctgcaccggcagaagaagctcaggtagctcagactaaaaagaaa
agaaaaagagtttctaccaatgcaggaaatgcagaagtatctacagaaaaaacagaaact
ccaaaaaacacagaatcccaagagcctgcacaggcagaagaaaagcctaacacacctcct
caacaacaggctaacagaccccaaaaaggacacaaccatccacagaacagtggaaaccaa
cataaaaaccagaaccagaaccaacatcagcaccaaaaccaaaatcagaacagacattct
gaaaaggcagaggagcagaacgaccataaaaaagaattcaatttcgatggattggtaagt
attgaaggggtactggaaatcttaccggataattacggattcctgcgttcttcagatttc
agctatatctcttctcctgatgatgtgtatgtttctacagcacagatcagaaatttcgga
ctgaaaaccggagataccgttaaaggaattgtaagattaccgaaagaaggtgaaaaatat
ttctcattattgaaacctacggaagttaacggacgtgacttggcgtttattaaagaccgt
gttgcatttgagtaccttacaccacttttcccacaggaaaaattcaaccttgcaggaagc
ggttctacagtttccacaagaattgtagatctttttgcacctattggtaaaggacagaga
gcaatgattgtagcacagcctaaaacaggtaagaccatgttgcttaaggacattgcgaat
tctattgcatccaatcaccctgaagtatatatgatggttcttctgatcgatgaacgtccg
gaagaggttaccgatatggagcgaagcgtaaatgcagaagtaattgcctccacatttgac
gaagccgctgaaaaacatgtgaaagtagccaatctggtcctagcaaaagcacagagaatg
gttgagtgcggacatgatgtagttatcttactggattctattacaaggctggcaagagca
tacaatactgtaacgcctgcatccggtaaagtactttccggtggggtagatgccaatgca
cttcacaaaccgaaaagattctttggggcagcaagaaaaattgaaggaggaggatctctt
accatcattgcaacagcccttatcgatacaggttccaaaatggatgaagtaatctttgaa
gaattcaaaggtacaggtaacatggagcttcagctggacagaaaaattgccaacagaaga
atctatcctgcaattgatcttgtatcatcaagcacccgtagagatgatcttcttctggat
gaagtgacctcgcagagaatgtggatcctcagaaagtatctttctgaaatgaatcctgta
gaagcaatggagtttgtagataaaaacatcaaaggaactctcaacaacgaagaattcctg
atgtctatgaataaataa
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