Chryseobacterium arthrosphaerae: EGY05_23465
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Entry
EGY05_23465 CDS
T05746
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
carh
Chryseobacterium arthrosphaerae
Pathway
carh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EGY05_23465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carh03400
]
EGY05_23465 (mfd)
Enzymes [BR:
carh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EGY05_23465 (mfd)
DNA repair and recombination proteins [BR:
carh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EGY05_23465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
SBP_bac_3
Latarcin
Motif
Other DBs
NCBI-ProteinID:
AYZ14702
LinkDB
All DBs
Position
5136164..5139532
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSISEKFLPDLMQKEFGKEIFTRLEDSQHIAVKGSAGSSVSVFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKDKVLYFPATHLEPYQVEKTQSANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVDKIKEFQLVSNMNFSVTGS
RVSLLQLLPKESYVISRNGMVGMQKIRTFYEKSLEKYDTLSKDIAHRAPQELFISDQEFL
FDYKKFKTVDFGGTVIEGLKEVTEIKMEQLPQPSFHKNFELLIEDIEEKQKDGYDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNSHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATFDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKAETLEALKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEETLRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEISNEAELHQFELELIDRFGA
LPKEAVNLLKSVALKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKDGNQLMMRKEKVKNVDEVNMLLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcagcgaaaaatttcttccggatctcatgcagaaagaattcgga
aaagaaattttcacccggttagaagacagtcagcatattgctgtgaaaggaagtgccgga
tcttcggtatctgtttttgtagctgagctttttttggttcagaagaaaaatattctttat
ctggtagatgataaggaagacgctttatatgccaatacagaaatggaagacctgctggga
aaagataaggtgctgtattttcctgcaacccatcttgaaccctatcaggtagaaaaaaca
cagagtgccaatcttgttttaaggactgaagtcctgaataaaatcaattccggaaggtcc
ccgaaggttattgtagcctatgccggagctttatcggaaaaagtattaaagaaagaagac
tttaaagccatttctcatcatataaaagtgggagatcagctggattttgattttgtggat
gagttgctcaaccattaccattttcagcaggctgatttcgtttctgagcctggtgagttt
tctgtgagaggagggattgtggatgtattttcctattcctatgaaaaaccctacaggatt
actttcttcggcaacgaagtggaaagcatcaaaacctttgatatagaaacacagctttcg
gtagataagataaaagagtttcagctggtatccaacatgaatttttcagtgacaggaagc
agggtttctctgttgcagctgttgccgaaggagagttatgtgatttccagaaacggaatg
gtaggaatgcagaagatcagaaccttctatgaaaaatctctggagaagtatgatacctta
agtaaagatattgcccacagggccccgcaggagctttttatctctgatcaggaattttta
ttcgattataagaagttcaaaaccgttgatttcggtggaactgtgatcgaaggtttaaaa
gaggtcaccgaaattaaaatggaacagcttccccagccttcattccataaaaattttgaa
ctgctgattgaagatattgaggaaaaacagaaagacggatatgatacctggatttctttt
tcaacagagaagcagaaagaaaggctggaatctatctttgaagagcttgagcatgagctt
ccgtttaaaagttttaaatctgagcttcatgaaggatttgttgataacagccataagctc
ctggtctatacggatcaccagatttttgaccgctatcagagatataaagcaaaaaataca
tttgccaaatcagaacagcttaccctgaaagatcttatgtccctgaaaataggggattat
attgcccatattgatcatgggatcggaaagtttatgggattggtaaaagtgaataatgac
ggtaagatccaggaatgctttaaactgacttataaaaacggggacttattatatgtcagc
atccattctcttcataaaatctcaaaatacaatggcccggatggaagggagattgtgctc
agtaagcttggatctccaacctggaaatcattgaaacagaagacaaaagcgaaggtgaag
cagattgcttttgaccttatcaaactgtatgctcagagaaaaacggcaaaaggttttgcg
tatacaccggattcttatttgcagaatgagctggaggcaagctttatttatgaagatact
ccggatcaggaaaaagccacatttgatgtgaagaaagatatggaagctgatacggtaatg
gatagactggtttgcggtgatgttggtttcggtaagacggaagttgcgattcgtgcggca
tttaaagcggctacagatggaaaacaggtggctgtattggtgcctacaaccattctggcc
ttccagcactacaggagttttaaagaaaggctgaaagatttcccggtgaatgtagcctat
gtcaaccgcttcagaacagcgaaacagaaggcggaaaccctggaagcccttaaaaacgga
aaagtagatatcattatcggaacccatcagctggtgagcagttccgtaaaattcaaagat
cttggattactgattattgacgaagagcataagttcggggtttcggtaaaggataagctg
aagacccttaaaaataatgtggatacccttacgctgactgctactccgatcccgaggaca
ttacagttttcattaatggcggcaagggatttatcggtaatcaaaacgccgccgcctaac
agacagccggtagatacccagctcatcggtttcaatgaagagaccttacgtgatgcggtt
tcttatgaacttcaacgtgacgggcaggtttattttatcaacaacaggattgaaaacctt
aaagatattgccggacttatccagcgactggtgccggatgcaagggtcattaccgggcat
gggcagatggaaggtaagcagctggaaaagaatgtgctggattttatggaagggaaatat
gatgttctggtttctactacgatcgtggaaagtggagtggatgttccgaatgcaaatacc
attttcatcaatgatgcacagcggttcggaatggcggatcttcaccagatgagaggaagg
gtagggcgaagcaacagaaaagctttctgttatctgatcacacctccttatgatatgatg
acttctgatgccagaaagcgtcttgaagcgatcgaacagttctctgatcttggaagtggt
ttccagattgcgatgaaagacctggagatccgtggcgcaggagatttgttgggggctgag
cagagcgggtttatcaatgaaatgggatttgaaacctatcagaagctgatgcaggaagcc
cttgaggaattgaaggatgatgctgattttgagaatttatttgaaaatgaggaagacagg
caaaaactcttcaaatcagtgaaggatgtcaatattgatacggatcttgaattgatgctg
cctgatttttatatttccaacactgaagaaagattgctgctgtatcagaaaattgctgaa
atcagtaatgaggcagaactgcatcagtttgaacttgaactgattgaccgttttggtgca
ttgccgaaagaagctgtaaacctattgaaaagtgttgccttaaaatggctggcggctgat
atcggctttgaaaagattgtcatgaaaaacggggtgttcttaggatattttccgggtaac
cctcaggataaattttatcagaccgaccgcttcaggcacattatcaattatttaaccaga
aaccctgcagaagctcagctgaaagaaaaatcaggcaaagatggtaatcagctcatgatg
agaaaagagaaggtgaaaaatgtagatgaggtcaatatgctgctcaaagctatcattgag
cataattaa
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