Chitinimonas arctica: FNU76_00840
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Entry
FNU76_00840 CDS
T06695
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cari
Chitinimonas arctica
Pathway
cari03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNU76_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cari03400
]
FNU76_00840
Enzymes [BR:
cari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FNU76_00840
DNA repair and recombination proteins [BR:
cari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FNU76_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
AroM
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDQ25009
UniProt:
A0A516SA36
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All DBs
Position
172083..175517
Genome browser
AA seq
1144 aa
AA seq
DB search
MPSLLPLPPLPAPSHRSRLALPAGSADANLLAALTSQCRPLVVLTADAQTASRLKDEIAW
FAPDKLVVLLPDWETLPYDSFSPHHDLISERLATLWQIRQQQADVVIVPVQTALMPLPPV
EYLTAYSFFLKAKTRLDVEKLRSDLAFAGYNHVTQVYGPGEFSIRGGLIDLFPMGSTLPY
RLDLFDSDIETIRTFDVDTQRSIYPVPEIRLLPAREFPLDENGRAKFRSRFREVFEGDPS
KSRVYKDISNGLIPPGVEYYLPLFFDQTATLFDYLPDDALLVQHGDLMQACERFWVDTQS
RYKMLAGDKDKPLLPPNELFVGVDQFFARMKAYRRLELSAAGPSVENAAEQAWREASAPL
PDLRVDRRADNPIQKLSDFVARFDGRILLLAESLGRRETLHQYFTEYGLPVAVAENWQAC
ESSDAPVLLSASPLSSGFIAGRLALITEADLYGQTSTLSRRKAQKRSNAEGMLRDLSELK
IGDAVVHEQHGIGRYKGLISMDLGEGASEMLHLEYAGGDTLYVPVAQLHVISRYAGGAED
SAPLHKLGSGHWEKAKRKAAEQVRDTAAELLNLYARRAAREGYAFGFNPHDYEAFAAGFG
FDETADQAGAIEAVVADMTSGKPMDRLICGDVGFGKTEVALRAAFVAVSDGKQVAVLVPT
TLLAEQHFQNFSDRFSDLPVRVAELSRFRSKKEVDAAIAGMEAGTIDIVIGTHKLVQDGV
KFKNLGLVIIDEEHRFGVRHKEQLKALRSEVDVLTLTATPIPRTLAMSLEGLRDFSIIAT
APNRRLAIKTFAANWSDGVIREAVLRELKRGGQVFFLHNEVDTIVNMQEKLAALLPEARI
GVAHGQMRERDLEQVMRDFNQQRFNLLLCTTIIETGIDIPNANTIIMNRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLVPDLKTLTPSASKRLEAIQQMEELGSGFYLAMHDLEIRGAGEV
LGDDQSGEMQEIGFSLYSAMLNEAVKALKKGIEPDLNAPLGVATEINLHSPALLPGDYCP
DVHERLVLYKRLANCESSDELDDMQQELIDRFGLLPPPAKILLDCHRLRLLAKPLGVLKL
DASDSAISVQFAKQNSIDPIKVLKLIQTKRNYKLAGQDKLRVESALPDPALRAARVKELL
QELR
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgctgctgccacttcctcctcttcccgctccgtcccaccgtagccgcctggcg
ctgccggccggctcggccgatgccaacctgctggccgcgctgacttcccagtgccgcccg
ctggtggtgctgaccgccgacgcccagaccgccagccgcttgaaggatgaaatcgcctgg
ttcgcgccggacaagctggtggtactgctgcccgactgggaaacgctgccctacgacagc
ttttcgccccaccacgacctgatttccgagcgcttggccaccctctggcaaattcgccag
cagcaagccgacgtggtgatcgtcccggtgcagacggcgctgatgcccttgccgccggtg
gagtacctcaccgcctacagcttctttctgaaggccaagacgcggctggacgtggaaaag
ctgcgcagcgacctggccttcgccggctacaaccacgtcacccaggtctatggccccggc
gaattttccatccgcggcggcctgatcgacctgtttcccatgggctcgaccctgccctac
cggctcgacttgttcgattccgatatcgaaaccatccgcaccttcgatgtcgatacccag
cgcagcatctatccggtcccggagatccgcctgctgccggcgcgcgaattcccgctggac
gagaacggccgtgccaagttccgttcgcgctttcgcgaagtgttcgagggcgatccgagc
aaatcgcgggtatacaaggatatttccaacggcctgatcccgcccggggtggagtactac
ctgcccttgttcttcgaccagaccgccaccttgttcgactatttgccggacgatgccctg
ctggtgcagcacggcgacctgatgcaggcctgcgaacgcttttgggtggacacccaaagc
cgctacaagatgctggccggcgacaaggacaagcccttgctgccgccgaatgaactgttc
gtgggcgtcgaccaatttttcgcgcggatgaaagcctatcggcggctggaactgagtgcg
gccggcccctcggtggagaatgcggcggaacaggcctggcgcgaagccagcgcacccctg
cccgatctacgggtggacaggcgggccgacaatcccatccagaaactgagcgattttgtc
gcccgcttcgacggccgcatcctcttgctggccgaatccctgggacgccgggaaacgctg
caccagtacttcaccgaatacggcctgccggtcgccgttgccgagaactggcaggcctgc
gaaagcagcgatgcaccggtcctgctcagcgcctcgccgctcagcagcggctttatcgcc
ggccgcctggccctgatcaccgaagccgatctatacggccagaccagcaccttgagccgg
cgcaaggcacaaaagcgcagcaacgccgaaggcatgctgcgcgatctgtccgaactcaag
atcggcgacgcagtggtgcatgagcagcacggtatcggccgctataaagggctgatcagc
atggacctgggcgaaggcgcctcggagatgctgcacctggagtatgccggcggcgacacc
ctctatgtcccggtcgcgcagctgcatgtaatcagccgctatgccggcggtgcggaagat
agcgcgccgctgcacaagctgggttccggccattgggaaaaggccaagcgcaaggcagcc
gagcaggtgcgcgataccgccgccgaactgctcaatctctatgcccgccgtgcggcacga
gaaggctatgcctttggcttcaacccgcacgactacgaagccttcgccgccggcttcggc
ttcgatgaaacggccgaccaggccggcgccatcgaagcggtggtggcggatatgaccagc
ggcaagccgatggaccgcctgatctgcggcgatgtcggcttcggcaagaccgaagtggcc
ctgcgcgccgcctttgtcgcggtatccgacggcaagcaggtcgcggtgctggtaccgacc
actctgttggccgaacagcatttccagaatttctccgaccgattctccgacctgccggtg
cgggtagccgagctgagtcgcttccgctccaagaaggaagtggatgccgccatcgccggc
atggaagccggcaccatcgatatcgtgatcggcacccataagctggtgcaggacggcgtg
aagttcaagaacctcggcctggtcatcatcgatgaagaacaccgcttcggcgtgcggcat
aaggagcagctcaaggccctgcgcagcgaagtcgatgtgctgaccctcacggccaccccg
ataccgcgcaccctggcgatgtcgctggaaggcctgcgcgacttttccattatcgccacc
gcgcccaatcgacgcctggcgatcaagaccttcgccgccaactggagcgacggcgtcata
cgcgaagcggtgctgcgcgagctgaagcgcggcggccaggtgttcttcctgcataacgag
gtggataccatcgtcaatatgcaggagaagctggcggcgctgctgccggaagcccgtatc
ggcgtggcccatggccagatgcgcgagcgggatctggaacaggtaatgcgcgatttcaac
cagcagcgcttcaatctgctgctgtgtaccaccatcatcgagaccggcatcgacatcccc
aatgccaacaccatcatcatgaaccgggccgataaattcggcctggcgcagctgcaccaa
ctacgcggccgggtgggccgttcgcatcaccaagcctatgcctacctgctggtgcccgac
ctgaagacgctgacgccctcggccagcaaacggctggaagcgatccagcagatggaggag
ctgggttccggcttctacctggccatgcacgacctggaaattcgcggtgccggcgaagtg
ctgggcgacgaccagtcgggcgaaatgcaggaaatcggcttttcgctttattcggccatg
ctcaatgaagcggtcaaggcgctcaagaagggcatagaaccggatctgaacgcaccgctg
ggcgtcgccaccgagatcaatctgcatagcccggcactgctgcccggcgattactgcccc
gatgtgcacgaacgcttggtgctttacaagcgcctggccaattgcgaaagctcggacgag
ctggacgatatgcagcaggaattgatcgaccgcttcggcctgctgccgccgccggccaag
atcctgctggactgccatcgcctgcgcctgctggccaagcccctgggcgtgctcaagctg
gatgcgtcggacagcgcgatctcggtgcaattcgccaagcagaacagcatcgatccgatc
aaggtcctcaagctgatccagaccaagcgcaattacaagctggccggccaagacaaatta
cgggtggaaagcgccctgcccgacccggccttgcgggcggcgcgggtgaaggaattgctg
caggaactgcgttga
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integrated database retrieval system
