Cryobacterium arcticum: PA27867_2368
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Entry
PA27867_2368 CDS
T04435
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cart
Cryobacterium arcticum
Pathway
cart03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PA27867_2368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cart03400
]
PA27867_2368
Enzymes [BR:
cart01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PA27867_2368
DNA repair and recombination proteins [BR:
cart03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PA27867_2368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANP73318
UniProt:
A0A1B1BLA8
LinkDB
All DBs
Position
1:complement(2662726..2666361)
Genome browser
AA seq
1211 aa
AA seq
DB search
MILQGLIPALSRASTFDNALAFAARDADFSLTEGLRAPLLAALMEQRSRLDKGRALLVIT
ATGRESEALRENLGCFSDDAEIVEFPAWETLPHERLSPSAEIVGRRLYALRRMRDWENAD
AATRRPLIVVASVRAALQPVADNLTDYDPLELTAGGRGHDLAAISVDLVNVAYARVDMVT
RRGEFAVRGGILDVFPPMAAHPYRIEFFGDEVEQIREFAVSDQRSMPEPITSVTLPPSRE
LLLSPAVRQRAREMQHEFPSLAGLLAKVAEGIPVEGMESLAPALVDRLVPVTHYLPRQAA
VAVISPERVASRAISLAETNREFLSAAWNAATAGAEAPIDLASGDFLTLGTLRDAVRYSA
PGAGASERVWWTMSSFQAAPTDIPVLPEHREIDELLTIRVEGDAVPSFQGNVEGAVGHLS
SRLKDGWTVAVVAQGAGLVDRAADVLAGAELPARIVTEFPAEPEPGIAYLIKASIAHGFE
IPETKLTLVSESEFYGRTVGYDARQIKKLASRRKNVVDPLQLKTGDHVVHQTHGIGKFLE
LTQREVSSGGRNPVKTTREYLVLEYAPSKRGHGGDKLYVPTDQLDLVSRYVGGEAPALSK
MGGSDWSAAKTKARRAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPD
QLTTIEEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQ
HMETFQERFAGFPIHLRALSRFQTDKESRETVAGMLDGTVDMVIGTHRLLSENTIFKDLG
LVIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRH
PILTFVGPYSDRQVAAAIRRELLREGQIFFVHNRVSSINRVAAQLAELVPEARVAVAHGQ
LPEAQLEQVVVDFWENKFDILVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVG
RARERAYAYFLYDENKPLSEIAHDRLATIAANNELGAGMQVALKDLEIRGAGNLLGGEQA
GHIAGVGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQK
LSGASGLAAADDQIGLVLEELTDRYGEPPEAVTNLIAVSRLRRHAQQAGLGEVVAMGSNL
RVAPVDLADSMQVRLQRMYPGSKYSAAAGTMIVPLPRVNGEPPADAALIAWTGSLLDAVF
PRPVDTAVPAH
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgattcttcagggcttgattccggcgctttcccgcgcctccacgttcgacaacgccctc
gccttcgcggcccgtgacgccgacttctcgctcaccgaggggctgcgggcgccgctcctc
gccgcgctgatggagcaacgctcccgcctcgacaagggccgggccctgctcgtcatcacc
gccaccgggcgcgaatccgaggcgctccgggagaacctcggctgcttctccgacgacgcc
gagatcgtcgagttccccgcctgggagaccctgccgcacgagcggctcagcccgagcgcc
gagatcgtgggtcgccggctctacgcgctccgccggatgcgcgactgggagaacgcggat
gccgccaccaggcgccccctcatcgtcgtcgcctcggtgcgtgccgccctgcagcccgtg
gccgacaacctcaccgactacgaccccctcgagttgaccgccggcggccgcggccacgac
ctggccgccatctcggtggacctggtgaacgtggcgtacgcccgcgtggacatggtcacc
cgccgcggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccatggccgcg
cacccctaccggatcgagttcttcggcgacgaggtcgagcagatccgcgagttcgcggtc
tccgaccagcgttcgatgcccgagccgatcacctcggtcaccctgccgccgagccgcgaa
ctgctgctcagccccgccgtgcgccagcgcgcccgggagatgcagcacgagttccccagc
ctcgcgggcctcctcgccaaggtggccgagggcatcccggtcgagggcatggaaagcctg
gcgcccgccctcgtggaccggctcgtgcccgtcacgcactacctgccccggcaggccgcc
gtcgccgtgatctcaccggaacgcgtcgcctctcgcgccatcagcctggccgagaccaac
cgggagttcctctccgcagcctggaacgccgccacagcgggcgccgaagccccgatcgac
ctggccagcggtgacttcctcaccctgggcaccctgcgggacgccgtgcgctacagcgcc
cccggcgccggcgcctccgagcgggtctggtggacgatgagctccttccaggccgcgccc
accgacattcccgtactgccggagcaccgcgagatcgacgagctgctcaccatccgcgtc
gagggtgacgccgtgccgagtttccagggcaacgtcgagggcgccgtcgggcacctctcc
agccggctcaaggacggctggaccgtcgccgtcgtcgcccagggcgccggcctcgtcgac
cgggccgccgacgtgctcgccggcgccgaactgcccgcccgcatcgtgacggaattcccg
gcggaacctgagcccggcatcgcctacctgatcaaagcctccatcgcgcacggattcgag
atcccggagaccaagctcaccctggtcagcgagagcgagttctacggccgcaccgtcggc
tacgacgcccggcagatcaagaagctcgcgagccgacggaagaacgtcgtcgacccgctg
cagctcaagaccggcgaccacgtcgtgcaccagacccacggcatcggcaagttcctggaa
ctcacccagcgcgaggtctccagcggcggccgcaacccggtcaagaccacccgcgaatac
ctcgtgctcgaatacgcgccgtccaagcgcggccacggcggcgacaagctctacgttccc
accgaccagctcgacctggtctcccgctatgtcggcggcgaggcccccgcgctgtcgaag
atgggcggaagcgactggtcggccgccaagaccaaggcccgccgtgcggtgcgcgacatc
gccgtggaactggtcaagctctactccgcgcggatggccagcaagggtcacgcgttcggc
ccggacaccccctggcagcgcgagctcgaggaggcgttcccgttcgcggagacgcccgac
cagctcaccaccatcgaggaggtcaaggccgacatggaacggcccatcccgatggaccgg
ctgctctccggcgacgtgggcttcggcaagaccgaggtcgccgtgcgcgccgcgttcaag
gccatccaggacggcaagcaggtggccatgctcgtgccgaccacgctgctcgtgcgccag
cacatggagaccttccaggaacgcttcgccggcttcccgatccacctgcgcgccctcagc
cggttccagactgacaaggaatcccgcgagaccgtggccggcatgctggacggtaccgtc
gacatggtcatcggcacgcaccggcttttgtccgagaacaccatcttcaaggacctcggc
ctggtcatcatcgacgaggaacagcgcttcggcgtggagcacaaggacgcgctgaagaag
ctcaagaccaacgtcgacatcctcgccatgagcgccacgcccatcccgcgcaccctggaa
atggccgtcacgggcatccgggagatgtccaccctggccaccccgcccgaggaccggcac
ccgatcctcaccttcgtcggcccgtactccgaccgccaggtggccgccgccatccgccgc
gagctgctgcgtgaagggcagatcttcttcgtgcacaaccgggtctccagcatcaaccgg
gtggccgcgcagctggccgagctggtgccggaggccagggtcgccgtggcgcacgggcag
ctgcccgaggcccagctggaacaggtggtggtggacttctgggagaacaagttcgacatc
ctggtctccacgaccatcatcgagaccggcctggacatcgccaacgcgaacaccatcatc
atcgaccgcgccgacaagtacggactcagccagctgcaccagctgcgcggccgggtcggc
cgggccagggaacgggcctacgcctacttcctctacgacgagaacaagccgctcagcgag
atcgcgcacgaccgtctggcaaccatcgcggccaacaacgagctcggcgccggcatgcag
gtggccctgaaagacctggagatccgcggagcgggcaacctgctcggcggcgagcaggcc
ggccacatcgcgggggtgggcttcgacctgtacctgcggatgatcggtgaggccgtgtcg
accttccgcggcgacgtcgccgagggtcagacggagctgcggctcgagctgcccgtcgac
gcgcatatccccgaggagtacgtcgacagcgagcggctgcggctggaggcctatcagaag
ctctccggcgcgagcgggctcgcggccgccgacgaccagatcggcctcgtgctcgaggaa
ctcaccgaccgctacggcgaaccgcccgaggccgtcaccaacctcatcgccgtctcccgg
ctccgccgccacgcgcagcaggccggcctcggcgaggtcgtcgcgatgggctccaacctg
cgggtggccccggtcgacctggccgattcgatgcaggtgcgcctgcaacggatgtacccg
ggctcgaagtactcggccgcggccggcaccatgatcgtgccgttgccgcgcgtgaacggt
gagccgccggccgacgccgcgcttatcgcgtggacgggctcactgctggatgcagttttt
ccgcggcccgtcgatactgccgtgcccgcacactga
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