Clostridium asparagiforme: NQ535_04600
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Entry
NQ535_04600 CDS
T08571
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
casp
Clostridium asparagiforme
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
casp03021
]
NQ535_04600
Transcription machinery [BR:
casp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NQ535_04600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
HTH_28
HTH_38
Phage_antitermQ
HTH_23
UPF0122
Motif
Other DBs
NCBI-ProteinID:
UWO77574
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Position
969531..972305
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AA seq
924 aa
AA seq
DB search
MMEQSIRELVERAKMGDQQAIAALYEKTSRKAYYLSLQLVKDQDQAQDILQDAFLKVFTN
LNMLQQPENFQGWLDTIVINKSKDYLKKKKPVLFSQMTGSEEPDSEPDFEDERGYFSPEK
QVDYQETKRLVQEMIDRLPEEQRMAVVLYYLENLSVGQIARLMECSEGTIKSRLNYGRKS
IKAQVLALEKKGTKLYCMPLVPFLYWMFRQQILAAAAPKAVGAAVLQAAGAGAAAAGAGN
AAGISAGTGAGGGIAGTTASGGTATGAGTAGGTAAAGTGAAGTTAAGAGTAGTTAAAGAG
TATVATGAAGKAGLAFLGKAIGVKGVAIVAAACVGVGAGTAGGVYVYKNHQAAEAAKIEA
EQSAQEEEAQENAGGRENEDEGTADGALGSARLSAEEREILSRLYQAAEQRDYKALAEAF
QPEFATLYNLEQEHFPGQYIIFDGQGISDTLEGHKLAVQVRSTKAKGGNHAGQTVYSVTC
YQGDFVDGLPEGELLAYRVEYRTWSNRPGQDVCITEADYERGVARGTVTTECWQIQEDTG
EAAWQIHLEGGYREDHWPEGMFEIGYPVGKQWVFDRNENVIEEGLAQELWFNVNVEYGDT
DEFNALPESEKQKRLNMETGTGYLVPDTTGNYRLDNFELMMDLESQDAVFWSSKGSYHVE
GTEGLFPFEITSAGAASQAGVDSGEADHSDAPEGASDLDPAVAEPYRAALRYPQYEHGKM
EDRYGEWKISASSFEDPNWNPVPSEMISHENYYEITNASIGVPYIVSADEFSRMKAGHTF
SVSVMDQNGLVSFEEFQVLRKDNNGYYVLTGDESGYEEAYLSPRADGTAFICSYDDDALY
SGVIYMGSLYFSKNCKIYDVNGFDPSAGSITLESYMTEEHTLTFDNGMAGYEYGLSNGYI
RLYGTPVFDPNTGLITEYAELYTP
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcagagtataagagagttggtggaacgggctaaaatgggggatcagcaggcc
atagcggcgctgtatgagaaaaccagccgcaaggcgtattatctttccctccagttggtg
aaggatcaggaccaggcccaggacattttgcaggatgcgtttttgaaggtgtttaccaat
ctgaacatgctgcagcagccggagaattttcagggctggctggatacgattgtgattaac
aagagtaaggattatctgaaaaagaaaaagccggtgctgttctcacagatgaccgggtcg
gaggaaccggactcggagccggattttgaggacgagagaggttatttctccccggaaaag
caggtggattaccaggagacaaagcggcttgtccaggaaatgatcgaccggctgcccgaa
gagcagcgtatggccgtggtactgtattatctggaaaatctttcggtggggcagatcgcc
cgtttgatggagtgttccgagggcaccatcaagagccggttgaattatggccggaaatcc
atcaaggcacaggtgctggcgttggagaaaaagggcaccaagctctactgcatgcctctg
gtaccgttcctttactggatgttccgccagcagatactggctgcggctgcgccgaaggct
gtgggagcggcggtattgcaggccgcgggagccggtgctgcggctgccggggccggaaat
gcggcggggatctctgcgggaaccggggcagggggaggaattgccgggacaaccgcttcc
gggggaactgccacgggagctggaaccgccgggggaactgccgccgcgggaaccggtgct
gctgggacaaccgccgcgggagctggaaccgccgggacaactgccgccgccggagccgga
actgctaccgtcgccacgggagccgccggaaaagccggtcttgcgttccttggcaaggct
atcggcgtcaaaggcgttgccattgtggcggcagcctgcgtgggcgtgggagccggaacg
gcgggcggcgtatacgtgtataaaaaccaccaggcggccgaggctgcaaagatcgaggcg
gaacaaagcgcgcaggaagaggaagcgcaggaaaatgccggaggcagggaaaacgaagat
gagggaacggcggatggagcgctggggagcgccaggctgtccgcagaggagcgcgaaatt
ctgagccgcctctaccaagcggcggagcagcgggattataaggcgctggcagaagcgttt
cagccggaatttgccacactgtacaatctggaacaagagcattttccgggacaatatata
atttttgacggtcagggaatttccgatacgctggaaggtcacaagctggcggtccaggtc
aggagtaccaaggccaaaggcggcaatcatgcggggcagaccgtatacagcgtaacctgt
taccagggggactttgtggacgggcttcccgaaggggagctgctggcttaccgggtcgaa
tatcgaacctggtcgaaccggccgggccaggacgtttgtataactgaggcagactatgag
cgcggggtggccagggggaccgtgacgaccgagtgttggcagatccaggaagatacgggt
gaggcagcgtggcagattcatttagagggcggttacagggaagaccattggccggaaggg
atgtttgagattggctatccggtagggaaacagtgggtgtttgaccggaatgaaaatgtg
attgaggaggggcttgcgcaggagctgtggttcaatgtgaatgtggaatacggcgatacg
gatgaatttaacgcattaccggaatccgagaagcaaaaacgcctgaacatggagacgggc
accgggtatctggttcccgacacaaccggaaactaccggcttgacaattttgaactgatg
atggacctggagtcccaggacgccgtgttctggagctcaaaaggttcctaccacgttgag
ggaaccgaggggctgttccccttcgaaataacatcggccggggcggcatctcaggccggg
gtggactccggcgaggcagaccattccgacgcgcctgagggggcctctgacctggatccg
gcggtagcggaaccttaccgggcggcgctgcgctacccgcagtatgaacatggcaaaatg
gaggaccgctatggtgaatggaagatatcggcctcatcgtttgaggacccgaattggaat
ccggttcccagcgagatgatttcccatgagaattattatgagattacaaacgcctctatt
ggggtgccgtacattgtatccgccgatgagttcagccggatgaaggcgggacacaccttt
tccgtcagcgtgatggatcaaaatggtctcgtatccttcgaggagtttcaggtattgaga
aaggacaataatggatattatgttctcaccggagacgaatccgggtatgaggaagcttac
ctgtcgccgcgggctgacggcaccgcatttatttgttcctatgatgacgatgccctgtac
agcggtgtgatttatatgggaagcctatatttttctaaaaattgtaaaatctacgatgtc
aacggatttgatccgtcggcgggctccatcaccctggaatcttatatgaccgaggagcac
acgctgacttttgacaacggcatggctggatatgagtatgggttaagcaacggctatatc
cggttgtacggcactcctgtttttgacccaaataccggtttgatcacagagtatgctgaa
ctttatacaccctga
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