Clostridium asparagiforme: NQ535_25960
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Entry
NQ535_25960 CDS
T08571
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ535_25960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
casp03019
]
NQ535_25960
Enzymes [BR:
casp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQ535_25960
Messenger RNA biogenesis [BR:
casp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQ535_25960
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SUa-2TM
UTP25
DUF4885
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UWO76202
LinkDB
All DBs
Position
complement(5739426..5741084)
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AA seq
552 aa
AA seq
DB search
MQFKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTL
QMLSGEETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEE
NLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAE
KQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDLLLHIL
KTKDLDSTLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLRVLV
ATDIAARGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAISFCDFDEKAQLADI
EKLIGKKLTEVADHPYPLQNNFPSVKATQPKRGGGKRADQAGAAQGPAKKKEKKAVPGTV
ESEERLSKKSQSTGARTPKKSRPSEALQSKKTSSQGSRRQTETSISSASSPHKTPAPAAR
SQTKRPAQGAPSSNRAPAQGAPSSNRPPAPAAPTPKPASTPKPTPPQPTPSPQKRRRNPF
SGLLRKPGGGFR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaagacttaaatattatgcctgaaattctcagggcattaaagaatgaaaac
tataaaattcccacccccattcaggaggaggcgattcccgttgtgctgagcgggcgggat
ctgctgggctgcgcccagacgggcacgggcaagacggccgcgtttgccattcccacgctg
caaatgctcagcggggaggagacgccccgttgggaaaaacggaccataaaggcgctggtg
gtgacgccaaccagggagcttgccatccagatttacgacagctttaatacctacggccag
tttaccgacctgaaatcctgcgtggtttacggaggcgtttcccagaaaccgcaggaggag
aatttaaagcggggcgtggatatcctggtggcgacgccgggaaggctgctggatctgatg
gatcagaagattgtgaatatcgagaagatcaaaatcctggtgctggacgaggcggaccgc
atgctggatatgggatttatccacgacgtgaagaaaataatcgcccggacgccggcggag
aagcagacgctgtttttctcagccacgatgcccccggacatcgccaagctggcggctaaa
atcctgaaaaacccggagaaaatcgagatcactcccgcggccactacggtggaggccatc
gagcagtatctgtattttgtggacaagggaaacaaaaaggatctgctgctgcacattctg
aagacaaaagatcttgactcgacgctggtatttacgcgcacaaagcacggggcggaccgg
gtggtccggcagctgtcgaagagcaatgtggtcgcccaggcgatccacggcgacaagtcc
cagggcgccaggcagagggcgctgaacgattttaaggataaaaagctgcgggtattggtc
gcaacggatattgcggccagaggaatcgatatcgacgagctggcctgcgtggtcaactat
gatctgccggatgtgccggagacctatgtgcaccgcatcgggcgcacaggccgggccggg
cttgagggaatcgccatctccttctgcgacttcgacgaaaaagctcagctcgcggatatt
gagaagctgatcggcaagaaactgaccgaggtggcggaccacccgtacccattgcaaaat
aatttcccgtcggtgaaggcaacgcagccgaaacggggcggggggaagcgcgcggatcag
gcaggagcagcgcaggggccggcgaaaaagaaagagaaaaaggcggtgccgggaacggtg
gagtccgaggagagattgtcgaaaaaatcacaatcaaccggagcacggacgccgaagaaa
tcacggccgtccgaagcgctgcagtcgaagaaaacctcatcccaggggtcccgccgccaa
acggaaacttcgatatcgtcagcgtcatcgccccacaaaacgccggctccggcagcgcgt
tcacaaacgaagcggccggcccagggagccccctcatcaaaccgggccccggcccaggga
gcgccttcatcaaaccggcccccagccccggcagctccaacgccgaagccagcctcaacg
ccgaaaccaacgccgccccagcccaccccatcgccccagaaacgccggagaaatcccttc
agcggcctgctgaggaaaccgggaggcggctttcggtaa
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