Croceibacter atlanticus: CA2559_02560
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Entry
CA2559_02560 CDS
T01256
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CA2559_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_02560
Enzymes [BR:
cat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA2559_02560
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CA2559_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
EAP87601
UniProt:
A3U5T4
LinkDB
All DBs
Position
complement(601404..604784)
Genome browser
AA seq
1126 aa
AA seq
DB search
MSKTSISQAFSRSPQFRKLQDTIAQSQENYHKTTLTGLVGSAVSFAIAEAFKQADKPFLA
IFNDKEEAAYYLNDFEQLIKDDEVLFYPGSYRRPYQIEETDNANVLLRAEVLNRLNSRRK
PALIVTYPDALFEKVVTKKELEKNTLKLSVGEQVSIDFVNEVLFEYKFHRVDFVTEPGEF
SLRGGILDVFSFSHDEPFRIEFFGDEVDSIRTFDVETQLSLEQTKKISIIPNVENKLLQE
SRESFLKYIHHKTIIFSKNTELVFGRIDSNFDKAVQAFKTLNAETKHSEPEELFATGALL
KEQLKGFTHFEILNKSTGAADTIQFHTRPQPSFNKQFNLLIENLNENHEDGYHNYIACVS
EQQAKRFHDIFDDAELNVKQYETVTVSLYQGFIDDESNSVCYTDHQIFERYHKFNLKNGY
AKKQAITLKELTNLTVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGDRDILYLSI
HSLHKITKYNGKDGQAPKVYKLGSQAWKKLKQKTKSKVKEIAFNLIKLYAKRRLEKGFAF
GPDTTMQLELESSFIYEDTPDQSSATEDVKKDMENERPMDRLVCGDVGFGKTEIAIRAAF
KAVDNGKQVAVLVPTTILAFQHHKTFSERLKDFPVTVEYLNRFRSAKERRETIADLEAGK
VDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTL
QFSLMAARDLSTITTPPPNRYPVETNVIRFSEESIRDAVQYEIQRGGQVYFVHNRIENIK
EVAGMIQRVVPDAKIGIGHGQMEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKETEFKDLYDTKEEDRV
FLKDTTIDTDISLLFPDDYINNISERLNLYTELNSISEEKELEAYEKRLLDRFGELPQQA
EDLLNSVRVKWIATQVGIEKLILKQGKMIGYFINDQQSPFYQSNTFTKVLQYVQTHPRQV
VMKEKKTRNGLRLLVTFDKVKTIDKALEVLKPLDFKSQKAQQEQVS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagacatctatttcccaagccttttctcggtctcctcaattcaggaaactgcag
gacactattgcccaatctcaagaaaattatcataaaacaacccttacaggacttgttgga
tctgccgtatcttttgctattgcagaagcttttaagcaagcagacaaaccattcttggcc
atatttaacgataaggaagaagcagcttattatttaaatgattttgagcaacttataaaa
gatgatgaggtgctgttttatcccggaagctacagaagaccttaccaaatagaagaaaca
gataatgccaatgtactacttagggctgaggttttaaacagacttaattccagaagaaaa
ccagccttaatcgttacctatccagatgcactttttgaaaaggtggtaaccaaaaaggag
ttggagaaaaacacgctaaaacttagtgttggagaacaggtttctattgattttgtgaat
gaagtattgtttgagtacaagtttcatcgtgtagattttgttactgaaccaggcgaattt
tctttacgtggtggtattttagatgtatttagctttagtcacgatgagccttttagaatt
gaattttttggggatgaagtagatagcataagaacttttgatgtagagacacagttgtct
ttagagcaaaccaaaaaaatttcgataatacctaatgtcgaaaataagttgcttcaagaa
tctagagaaagcttcttgaaatatattcatcataaaactatcatcttcagtaaaaataca
gagcttgtatttggaagaatagattcaaactttgataaggctgtacaagcttttaaaaca
ttaaatgcagaaactaaacacagtgaaccagaagagttatttgctacaggagcactgtta
aaagagcaacttaaaggatttacgcattttgaaattttaaataaaagtactggtgcggca
gacaccatacaatttcatacaagaccacaaccaagctttaataagcaatttaatttgctt
attgaaaatttaaatgaaaaccatgaagatggttatcacaactatatagcttgcgtaagt
gaacagcaagccaagcgttttcatgatatttttgatgatgcagagcttaacgtaaagcaa
tatgaaacagtaacagtttctttataccaaggttttatagatgatgaaagtaatagcgtt
tgctatacagatcatcaaatttttgagcgttatcataaatttaatttaaagaatggctat
gctaaaaaacaagccattactttaaaagagctaaccaaccttactgtgggagattatgtt
acacatatagatcacggtattggaaaatttggtggtctacagaaaattgatgttgagggt
aagaagcaagaagctattaagttaatttatggagatagagatattctttacctaagcata
cattcactacacaaaataaccaagtataatggcaaagatgggcaagcacctaaagtttat
aaattaggtagccaagcttggaaaaaactgaaacaaaaaaccaagtctaaggttaaggaa
atagcttttaaccttataaaattatatgcaaaacgacgcctagaaaaagggtttgcattt
ggtccagataccacaatgcaacttgagttagaatcttcttttatatatgaagacacaccg
gatcaaagtagtgctacagaagatgtaaaaaaagatatggaaaacgagcggccaatggat
cgcttagtttgtggtgatgtaggttttggtaaaaccgaaattgccataagagcagcattt
aaggctgtagataatggtaagcaagtagcagttttagtaccaactacaatcttggcgttt
cagcatcataaaacatttagtgaacgtttaaaagattttcctgtcacggtggaatattta
aataggtttagaagcgctaaagaacgacgagaaaccatagcagatttagaggcaggtaag
gtagatatcattataggaactcaccaattagtaaataagactgtaaagtttaaagattta
gggctgttaattgtagatgaagaacaaaaatttggtgtggctgtaaaagacaagctaaaa
accataaaagaaaatgtagacacacttaccttaacagcaacaccaatacctagaacgctt
cagtttagtttaatggctgcaagagatttaagtaccattacaacgccaccaccaaacaga
tatcctgttgagactaatgtaattagattttcagaagaaagtattcgtgatgctgtgcaa
tatgaaatacaacgaggcggtcaagtttattttgtacacaaccgtatagaaaacattaag
gaagttgctggtatgatacaacgtgtagtgccagatgcaaaaattggaattggtcacggc
caaatggaaggaaaaaaactggagcaacttatgctaagttttatgaatggagattttgat
gttctagtgtctactacaattattgaaagtggtttagatgtaccaaatgccaataccata
tttataaacaatgccaataactttggtctttcagatcttcaccaaatgcgtggccgtgtt
ggtcgtagtaataaaaaggcattctgttattttattacaccaccatattctgcaatgaca
gatgatgccagaaaacgtattacagcgttggagcaattctcagatttaggaagcggtttt
aatatagccatgaaagatttagaaattcgtggagcaggagatttacttggaggtgagcaa
agcggatttataaatgaaattggtttcgatacctatcagaaaattttaaatgaagctatt
gaagagcttaaggaaacagaatttaaagatctttacgacactaaagaagaagatagagtt
ttcttaaaagacaccactatagatacagatattagccttttatttccagatgattatata
aataatatttctgaacgcttaaacctttatacagagctaaactctatttctgaagagaag
gaacttgaggcatacgaaaaacgcctgttagatcgttttggagagttgccacaacaagca
gaagatttattaaactctgtaagggtaaaatggatagctacgcaagtgggtattgaaaag
ctaatacttaagcaaggtaaaatgattggctactttataaacgatcaacaaagtcctttt
taccaaagtaatacctttactaaggttttacaatatgtgcaaacacatcctcgtcaagta
gttatgaaagaaaagaaaacaagaaacggcttaaggcttttagttacttttgataaagta
aagacaattgataaggctttagaagttttaaaacctttagattttaagtctcaaaaagca
caacaagaacaagtgtcttaa
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