Cygnus atratus (black swan): 118244641
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Entry
118244641 CDS
T09349
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II-associated protein 1 isoform X1
KO
K20826
RNA polymerase II-associated protein 1
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118244641 (RPAP1)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
118244641 (RPAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
118244641
NCBI-ProteinID:
XP_035395612
EnsemblRapid:
ENSACYG00000012981
LinkDB
All DBs
Position
5:32121301..32167964
Genome browser
AA seq
1480 aa
AA seq
DB search
MVLVAVLMISPICYFSYMFSLGAAGKELLFAMARAGLQEQEGRMLSRPKPGESEADLIHF
QNQFLAARASPAVKIVKKADKRKGEEGSTDVERPPLQDSKDVVMLDDFPDILPALTPGPP
KKSKIKSASVHFEDEDPEERLESHDRHITAVFSKIIERDTSAVAVTMPVPTGDPFPRTFH
RSEIKSEVKVGSGRKSIFAQKMAARRAAEKEATAPSAAECVQIRSAPRDALDPEGSAEEA
PRPGNRDDKADDFFTTQRPCIITGEGLGNQNSEQEAQAIHKENLEKLQSMSQEEILQEQE
KLLAQLDPSLVAFLKSRRGVNVGQKNELKKEQNRPEEFVESPTVPQHGVGASLSIQESGL
EESVRKEENMKMEMTDDDLPVKPKKEWVHMDNVEFEKLEWMKDLPSPRQKKTKKGMQARF
SLKGDLIPADADLPTHLGLHHHGEEAERAGYSLQELFHLSRSQVIQQRTLALQVLGRIVQ
KARAGEFASSLKGSILRLLLDAGFLFLLRFSLDDAVDNVMAASVGALRALLVSLDDEKYL
DWTFSWYQGMAAFPFVPKNEEEEEEEEEELTGTEKSQNKKLKDENKPDPDVARYDVVKGL
LKTRIQHRLRYILEVVRPVPTVVLDILHILTHIARHSSEACSQLLDCPRLIDTIVREFIP
TQWDPHVAEPGCLLTSLHGVACSTAMKFIRVLASGGRNATARLLNKFEMKSRLIRFIAED
PQDLLLPKEEAIRLSTEAFRLWAVAAGYGQACDLYRDLYPVLVRILQSLPELLSSCHEKN
PMRELSVQRATAVITLLMHVTQTAGCTVELQAKLSSNSSEASEQIPPPPVAWNHVSGLQP
FIETGLKKILQEISQTETWQTLQPLTTTYMIYLGVYYRACSQQPSVNPIDCLEELERLTS
EVLQPLLSQPAICSMWDLLRPCSALCNPLSCSPGPESVLSIISLSCTGGKPSLNLVGSKS
PFPFLTALLFLINSITRIHKGLISKYSSVLSFGGLKDYLHQSWQTGPPSVTPSSAWMLRH
EYHLQYFVLALAKRMVGTCPDYRQHASLHHCVALALLSRLLPGSEHLAYEVLLDLAFNPE
FLPEGKTGGPEAADFSDILHLGTSAKLAQPASAAAASSKPTRGALLKESYQNLPVIRSCY
LSHFVHLQPALVHSQASYEGRNYLIQSMLLPEVKGPILPSDWPFFPLISLYNKVTNAETR
GAVLNSLPLDLVNTVTWNLQWVLLLETWRAKTLQSIPTAAKLARLMCVFLTGGDLFLEAL
IHCYTAALLSIYCQPKVLDSLNLDAPLPGLASFHDLYISLLEQFEGVSFGDPLFGVFVLL
PLQKRFSVHLRLSVFGEHTSILRALGVPLQQFPVPLERYTSPPEDNLNLLRLYFRTLVTG
ALRHTWCPVLYVVAVAHVNSFIFSQDGTTQEADAARKSMLRKTWLLVDETLKKHLLYYRL
LNAESPLGFDLYEQLPPMRLKYLQTVIQKENKENALVLVS
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggtactggtggcagtgctgatgatcagtcccatttgttatttttcttacatgttttct
ctgggtgctgctggaaaagaattgctctttgcgatggccagggccggcctgcaggagcaa
gaaggcaggatgttgtcgagaccaaagcctggcgagtccgaggcagacctgatacacttt
caaaaccagttcctggcagccagagcttcacctgcagtgaagattgtgaagaaagcagac
aagagaaagggggaggaagggagcacagatgttgagagacccccgctgcaggacagcaag
gatgtagtgatgctggatgattttcctgatattctcccagctctaactcctggtcctcca
aaaaagtccaagatcaaaagtgcctctgtccactttgaggatgaagatccagaggaaaga
cttgagagtcatgatcgacacattacagcagtcttcagcaaaatcattgaacgagacacg
agcgcagtagcagtgaccatgccagtgcccaccggagacccatttcccagaacatttcat
cgttctgagataaaaagtgaggtgaaggtgggatctggaagaaaaagcatctttgcacaa
aagatggcagcaagaagggctgctgaaaaggaagcaacagctccctctgctgctgagtgc
gtgcaaataagatcagctcctcgggatgccctggatcctgagggatcagcagaagaggca
cctcgccctggcaacagggatgataaagctgatgactttttcaccactcagcggccttgt
atcataacaggagagggtcttggaaaccaaaatagtgagcaggaagctcaggctattcac
aaagagaacttggagaagctgcagtccatgtcccaggaagagatcctgcaggaacaggaa
aagcttctggctcagctggatcccagtttagttgctttcttaaagtcacgacgtggtgtt
aatgtaggccagaaaaacgaattaaaaaaggaacagaacagaccggaggagtttgtggaa
tctcctactgtgcctcagcatggtgtaggagcatctctttccatacaggagtcaggtctg
gaagaatctgtaaggaaggaagaaaatatgaaaatggaaatgacagatgatgatctgcct
gtgaagccgaagaaggaatgggttcacatggacaatgtggagtttgagaagctggagtgg
atgaaagatttgccttcaccccgacagaagaaaaccaaaaagggaatgcaagctcgattc
agcttaaagggagacttgattcctgcagacgctgatttgcctactcatctaggcctgcat
caccatggagaagaggcagagagggctggttattctctccaagagctctttcatttatct
cgcagccaagttattcagcagaggacgctggctctacaggtcttgggtcgtattgttcaa
aaggctagggctggggagtttgcatcatccttgaagggcagtattctgcgtctgctgctt
gatgctggatttctcttcttgctgcgcttctcgttggatgatgcagtggataatgtcatg
gcagcatctgttggtgctctccgggctctactggtgtcactcgatgatgagaaatatctc
gattggactttctcatggtaccaagggatggctgcattcccctttgtccccaagaatgag
gaggaagaagaggaagaagaggaagaattaactggaacagagaagtctcagaataaaaaa
ctaaaggatgaaaacaagccagatccagatgtggcccgatatgatgttgtaaagggactt
ttgaagacacggatccagcaccggctgaggtacattcttgaggtggtacgacctgttcca
acagtagtcctggatatcctgcacatccttactcacatagcgaggcattcctctgaagca
tgcagccagctgcttgactgtcctcggttgattgacaccattgtcagggaatttatccct
actcagtgggatcctcatgtggctgaaccagggtgtttactcaccagtctccatggagtt
gcttgctccactgctatgaagttcatcagagtattggcatctggaggcagaaatgcaaca
gctaggctgcttaacaagtttgaaatgaagagccgattaattcgatttatagctgaagat
ccccaggatctgcttctgccaaaggaagaagccatcaggctaagcactgaagccttccgg
ctgtgggctgtggctgctggctatggtcaggcctgtgatctctacagggatctctaccct
gtgctggtgaggatacttcagtccctgcctgagttgctcagctcttgccatgagaagaac
ccaatgcgtgagttgtctgtccagcgagctacagcagtgattactctgctgatgcacgtg
acacaaacagcaggctgcacagtggagctgcaggccaagttgagcagcaatagttcagaa
gctagtgaacagattccgcctcctccagtagcatggaatcacgtgtcaggcttacagcct
ttcattgagactggtctgaaaaaaatcctacaggagatatcccagacagaaacttggcaa
actctccagcctctgaccacaacttatatgatctacctgggagtttattacagggcttgc
agccaacagccatcggtcaatccaattgactgcttagaagaactggaacgtttgacatct
gaggtgctgcagcctcttctcagccagccagccatatgcagcatgtgggatttactcagg
ccatgttctgctttgtgcaatcctctgtcctgttccccgggacctgaatctgtgttgagc
atcatatctttgagttgtactggaggcaaaccttctttgaacctagttggttccaagtcc
cctttccccttcctcactgccctcctgtttctcatcaatagcatcactcgcattcacaaa
gggctgatcagcaagtacagctctgtactgagctttggaggcctgaaggattatctgcac
caaagctggcagactggacctccctctgtaactccctcatctgcgtggatgctgcgccat
gaatatcatctgcagtacttcgtgttagcgttggctaagagaatggtgggcacttgtcca
gattacagacagcatgcctcgctccatcactgcgtcgccctggcattgctaagccgtctg
ttaccagggagcgagcatctggcttatgaggtcctgctggatcttgcctttaatccagag
tttcttcctgaagggaaaactggagggccagaagcagctgacttttctgatatcctgcat
ctgggtaccagtgccaaactggcacagcctgcctctgcagcagcagcatcttcaaagcct
acacgtggtgccctgctgaaagaatcataccagaatctgcctgtcatccgctcctgctac
ctctctcattttgttcacttgcagcctgcccttgtgcattcccaagcatcctacgaagga
cggaattacctcatccagtcaatgctgcttcctgaggtcaaagggcccatcctgccttca
gactggcctttctttccacttatcagcctctacaacaaagtgactaatgcagagacacgg
ggggctgtgctgaactctctcccacttgatctagtcaacactgtgacctggaaccttcag
tgggtcttgttgctggaaacctggcgtgctaaaacccttcagagcatccctactgctgcc
aaacttgcacgacttatgtgtgtcttcctcacaggtggtgacctctttctagaagcactg
atccactgctacacagctgcccttctctctatctactgccagcccaaggtgctagactcc
ctaaacttggatgctccactccctggtttggcttccttccacgatctctatataagtttg
ctggaacagtttgaaggcgtctcctttggagatccactctttggagtctttgttcttcta
cctctgcagaagcgtttcagtgttcatctgcgtctgtctgtttttggggagcacacaagt
atcctgcgggcactgggagtgccgctccagcagtttcctgtacctcttgagcgatatact
tcccctcctgaggataacctgaacctcctgcgactctacttccgaacgctggtcactggc
gcactgcgccacacctggtgccctgttctttatgtggtggctgtggctcacgtgaacagc
tttattttctcccaagatggtacaacacaggaggctgatgctgctcggaaaagcatgctg
cgaaagacgtggctcttggtggatgagaccctgaaaaagcaccttctctactacagactg
ctgaatgccgagagccctttgggatttgacctttatgagcaactccctcccatgcgactg
aagtacctgcagacggtgatacagaaagaaaataaggagaatgcactagtgctagtctca
tag
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integrated database retrieval system
