Cygnus atratus (black swan): 118252313
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Entry
118252313 CDS
T09349
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118252313 (RC3H2)
04121 Ubiquitin system [BR:
cata04121
]
118252313 (RC3H2)
Transcription factors [BR:
cata03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118252313 (RC3H2)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118252313 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
118252313
NCBI-ProteinID:
XP_035411361
EnsemblRapid:
ENSACYG00000006090
LinkDB
All DBs
Position
19:2043264..2072936
Genome browser
AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGNVISVI
GSPEATGKMVPSSNGIANLESGVPQLIPRCADTSLRALENTKKGGKTGANGQNVSGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSQFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDMIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSALHMATPSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSSYGSDST
SSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYTEDCADAKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQDDQLLNGTTVENGHPLKQHQKESMEQKRQSLGEDLVILEEQKTILPVTSCFS
QPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaacgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaatacagac
atcgatgtgcttcctgtaaactttgcactcctccagttagttggagcccaggtacctgat
catcagactgtaaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgctagc
ttgaatcagagtgcactgagccgtccaatgcaaaggaagcttgtgacactagtgaattgt
caactggtagaggaagagggtcgggttcgagctatgagggcagctcgatcactgggagag
agaactgttacagaactgatcttgcagcaccaaaatcctcagcagctttctgccaacctt
tgggctgctgtcagggcacggggatgtcagtttctagggccagctatgcaagaagaagca
ctgaaacttgtattactggcattggaagatggctctgcgctctcaagaaaagttctggta
ctttttgttgtgcaaaggctagaaccaagatttcctcaggcctctaaaacaagcattggt
cacgttgtgcagctactgtatagagcatcatgctttaaggtcactaaaagggacgaagat
tcttctctgatgcaacttaaagaagagtttcggagttacgaggctttgcggagagagcac
gatgcccaaattgttcatattgccatggaagcaggacttcgaatatcaccagaacaatgg
tcttcccttctttatggtgacttggcacataaatcacacatgcaatccattatcgacaag
ctccaatctccagagtcttttgcgaagagtgtacaagaattgacaattgtcttgcagcgc
acgggtgatcctgcaaacttaaacaggctcaggcctcatttggagctcctggcaaacata
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtggct
gtaaagactgtggtacatggattagtggatttcattcagaattacagtagaaaaggacat
gaaactccacagccacaaccaaatagcaaatataaaacaagtatgtgccgagaccttcga
cagcaagggggatgtccaagaggaaccaactgtacttttgctcattctcaggaagagctt
gaaaaataccgcctgaggaacaaaaaaatcagtgcaacagtgagaacgttcccccttcta
aataaagtcggcgtaaatagcactgtctcgaccactacaggaaatgtaatttctgtcata
ggaagccctgaagcaacagggaagatggtgccgagtagtaatggaatagctaatctagaa
agtggtgttccccagttgatccctcgctgtgcagacacctccttgagagctttggagaac
accaagaagggagggaagactggagccaatggccagaatgtttcgggatcccctacagaa
tcactacctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcccaatattggaacagaagtgaactctgtgcctccaaaatccagc
cagtttgttcccagagtacctgtctaccctccacattctgataacgttcaatattttcaa
gatcccaggactcagttgtcgtatgaagttccacagtacccccagacaggatattatcca
ccacctccaacagtaccagctggcgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagatcgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccttctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtatccacgagatgatatgattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatcattacgtgagagatacaactctttggatggg
tattactctgtggcttgtcaacccccaaatgaacagaggactgtgcctttaccaagggag
ccttgtggtcacttgaagactggttacgatgagcaattaagacggaagccagagcaatgg
gcacaataccacacacagaaaactcctcttgtgtcgtcagcccttcatatggcaacaccc
tctccaacaccaccttctcctctcttcagtgtagatttcagcacagagttctcagagagt
gtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactattcaccgtgg
tcttgtggcactattggctcttgtataaatgctatcgactcagagcccaaggatgtgatt
gccaattcaaatgccgtgttaatggatttggacagcggggatgttaaaaggagagtgcat
ttatttgaaactcagagaagggcaaaggaagaagatcctataatcccatttagcgatgga
ccgatcatttccaagtggggtgcaatctccaggtcatcccgtacaggttatcacacaaca
gatcctattcaggccactgcttcccaaggaagtgcaactaagcccatcagtgtatcagat
tatgtcccttatgtcaatgctgttgactcgagatggagttcgtatggctcagattccact
tcatcagcacgttacgcagaacgggacagattcatagttacagatctgtctggtcacaga
aagcattccagcactggagatttattaagtattgaattacagcaggccaaaagtaactca
ttattacttcagagagaggcaaatgcactagccatgcagcagaagtggaattctctagat
gaaggcagtcgccttaccttaaatcttttaagcaaggaaattgatttgaggaatggtgag
actgattatactgaagactgtgcagatgcaaagccagatcgagacattgaattggagctg
tcagccctagatacagatgaacccgatgggcagggtgaacaaatagaagagattctggat
atacagctaggtattagttctcaagatgatcagctgctcaatggaacaactgtagagaac
gggcatccactaaagcagcaccagaaagaatctatggaacagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtcagt
gttggcagcctcattttgaaaactgctcacattatgtctgaggataaaaatgacttttta
aagcctgttgcaaatggcaggatggttaacagctga
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integrated database retrieval system
