Cygnus atratus (black swan): 118259886
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Entry
118259886 CDS
T09349
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03030
DNA replication
cata03410
Base excision repair
cata03420
Nucleotide excision repair
cata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118259886 (LIG1)
03410 Base excision repair
118259886 (LIG1)
03420 Nucleotide excision repair
118259886 (LIG1)
03430 Mismatch repair
118259886 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cata03032
]
118259886 (LIG1)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118259886 (LIG1)
Enzymes [BR:
cata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118259886 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
118259886 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118259886 (LIG1)
DNA replication proteins [BR:
cata03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118259886 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118259886 (LIG1)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118259886 (LIG1)
NER (nucleotide excision repair)
Other NER factors
118259886 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
118259886 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
118259886
NCBI-ProteinID:
XP_050571993
LinkDB
All DBs
Position
32:complement(575438..581258)
Genome browser
AA seq
777 aa
AA seq
DB search
MQRRITSFFGPPRAADGGAAPVSPSIPSVPSQCAPQYPPSIPPCPPAPGVPGDEDGPPPP
KRCRQAPGDQDRGPPAASRWVTAWWGGGGTHGCWGSPPCHRCPPPFPPPTLWSPRSPQPL
DPSQYDPARSGYHPLRDACWGPGQSVPYLAVARTFERIEEASARLKIIETLSNFLRSVLA
LSPGELLPCLRLCLNRPGAASEGLELGIGESLLTRALAQATGRQLAQIRSEAQDKGDLGL
VAESSRCTQRTVVAPARLSAAGVLGKLREMATMSGNASASKKIGIIKGLFVACRHSEARY
LVRSLSGKLRIGLAEQSVLTALAHAVALTPPGQGWPPAVLDAGQGMAPEARRAWLEEQSR
ILKQTFCELPDYAAIVPVLLEHGLEQLPQHCGITPGVPLKPMLAQPARGVGELLKRFEEA
AFTCEYKYDGERAQIHVLENGAVFIYSRNQENTTAKYPDLVDRIPKVLKPGVRSCILDAE
AVAWDRTTRQIQPFQVLMTRKRKDVDAAAIKVQVCLYAFDLLYLNGEPLVRQPLAARRKL
LRQSFEEVEGEFVFATAADTRSAEEVSDFLDKAIKASCEGLMVKTLEVDATYEIAKRSHK
WLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFT
EESLEKHYGFLKEHVLAQPRPYYRWDSGAAPDRWLAAVQVWEVKCGDLSISPVYRAAVGL
VDEEKGISLRFPRFLRVREDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGEDEEFY
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcggatcacgtccttcttcgggcccccccgggccgcggacggcggcgccgct
cctgtgtcccccagcatcccttcagtgccctcccagtgtgccccccagtatcctcccagc
atccccccgtgcccccccgccccgggggtcccaggggacgaggacgggcccccccccccc
aagcgctgccgccaggctcccggtgaccaggaccggggacctccggccgccagcaggtgg
gtgacagcatggtggggggggggtggcacccatgggtgctgggggtccccaccgtgccac
cgctgcccccccccctttcccccccccaccctgtggtctccccgcagcccccagccgctg
gacccgtcccagtatgaccctgccaggagcgggtaccacccgctgcgggacgcctgctgg
gggcccgggcaaagcgtcccctacctggcggtggctcgcaccttcgagcgcatcgaggaa
gcctcagcccggctgaagatcatcgagaccctcagcaacttcctgcgctcggtgctggcc
ctgtccccgggggagctgctgccctgcctgcgcctctgcctcaaccgcccgggggccgcc
tctgaggggctggagctgggcatcggcgagagcctcctgacccgcgccctcgcccaggcc
accggccggcagctggcgcagatccgcagcgaggcgcaggacaagggggacctggggctg
gtggccgagagcagccgctgcacccagcgcaccgtggtggcgcccgcccgcctcagcgcc
gcgggcgtcctgggcaagctgcgggagatggccaccatgtcgggcaacgcctcggccagc
aagaagatcggcatcatcaaggggctcttcgtcgcctgccggcactcggaggcgcgctac
ctcgtccggtcgctcagcgggaagctgcgcatcgggctggccgagcagtcggtgctcacc
gccctggcacacgccgtcgcgctcacccccccggggcaagggtggccgccggccgtgctg
gacgccgggcagggcatggcccccgaggcacgcagggcatggctggaggagcagagccgc
atcctcaagcagaccttctgcgagctgcctgactacgccgccatcgtcccggtgctgctg
gagcacgggctggagcagctgccccagcactgcggcatcaccccaggtgtccccctgaag
cccatgctggcccagcctgcccgtggcgtaggggagctgctgaagcgcttcgaggaggca
gcgttcacctgcgagtataaatacgacggcgagcgagcccagatccacgtcctagagaac
ggggccgtcttcatctacagccgcaaccaggagaacaccaccgccaagtaccccgacctc
gtggaccgcatccccaaggtgctgaagcccggtgtgcgctcctgcatcctggatgcagag
gctgtggcgtgggatcggaccacgaggcagatccagcccttccaggtgctgatgacgagg
aagaggaaggatgtggacgcagctgccatcaaggtgcaggtctgcctctatgcctttgac
ctgctctacctcaacggggagccgctggtgcggcagcccctggctgcgcggcgcaagctt
ctgcggcagtccttcgaggaggtggagggcgagttcgtcttcgccaccgccgcggacacc
cgcagcgccgaggaggtctcggacttcctcgacaaggccatcaaggcctcctgcgagggc
ctcatggtgaagaccctggaggtggacgccacctacgagatcgccaagcggtcgcacaag
tggttgaagctgaagaaggactacctggatgggcttggggacacgctggacctggtggtc
atcggcgcctacctgggcaagggcaagcgtgcagggatctacgggggcttcctgctggcc
tgctacgacgaggagagcgaggagtaccagagcatctgcaagatcggcactggtttcacg
gaggagagcctggagaagcactatggcttcctcaaggagcatgtgctggcccagccgcgt
ccctactaccgctgggacagcggggcggcccccgaccgctggctggcggcggtgcaggtc
tgggaggtgaagtgcggggacctctccatctcccccgtctatagggcagccgtggggctg
gtggatgaggagaagggcatctcgctgcgcttcccccggttccttcgtgtgcgggaggac
aagaagccggaggaggccaccagcagcacccaggtggctgagctgtacaagaagcagcag
cagatccagaaccagcagcaggcagagaaaggggaggacgaggagttttactga
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integrated database retrieval system
