Cygnus atratus (black swan): 118259895
Help
Entry
118259895 CDS
T09349
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03013
Nucleocytoplasmic transport
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118259895 (UPF1)
03015 mRNA surveillance pathway
118259895 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118259895 (UPF1)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118259895 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118259895 (UPF1)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118259895 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118259895 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118259895
NCBI-ProteinID:
XP_035425645
EnsemblRapid:
ENSACYG00000016192
LinkDB
All DBs
Position
26:complement(1580424..1602433)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAVQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccctagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgccagggcccggtcaggccggcccgggacaaggccaaggc
ccccccggagcggtccagggcccgccgggccccatcgaggcgcaggttaatggacccgat
ggcattctgcagaacggagcggtggatgataacgtagctaaaaccagccagcttctggca
gagctgaactttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aagtggttctgcaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgcggatgtcgtaacgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtgaagattccatctgagcaggaacagttgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaactcttgaggacttagaa
aagcctggcgttgatgaagagccacagcatgtcctactcagatatgaagatgcttatcaa
taccagaatatatttggtcctctagtcaagctcgaggctgactatgacaagaagctcaaa
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtttaatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcccctgtggaagttactcataacttccaagtggattttgtatggaaatctact
tcatttgacagaatgcagagtgctttgaaaacatttgctgtggatgagacttcagtgtca
gggtacatctatcacaaactgttagggcatgaggtagaagatgtaattattaaatgtcag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagtcttattcagggtccccctggtaccggaaaa
acagtgacatcagctacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccgagtaatatagctgtagatcagttgactgagaagattcatcaaactgga
ctgaaggtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaagcgctaccgtgcacta
aaacgaacagcagaacgtgaattacttatgaatgcagatgtgatctgttgcacttgcgtg
ggagctggtgatccaaggcttgcaaagatgcagttccgctccattctgattgatgaaagc
acccaggctactgagccagagtgcatggtgccggttgtcctgggagcgaaacagcttatt
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcgaaggct
ggcctatctcagtctctcttcgagaggctcgtggtgctggggattcgcccgattcgcctg
caagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaatatcttctatgag
ggttcactccagaatggtgttactgcagctgaccgtgtgaaaaaaggatttgatttccag
tggccgcagccagataagcccatgtttttctatgttacacaaggacaggaagaaattgcc
agctcgggcacctcttacttaaacaggactgaagctgccaatgtagagaagataactaca
aagctattgaaagctggtgccaaaccggatcagattggcattattactccttatgaaggt
caaagatcctatctggtgcagtacatgcaattcagtggttccttgcatacaaaactctac
caggaagtagaaattgcgagtgtggatgccttccaaggaagagagaaggactttattatc
ctttcttgtgtgagggccaacgaacaccaaggaataggatttctgaatgaccccaggcgt
cttaatgtggctctaacaagagcaaggtatggagtaattattgttgggaacccaaaagcg
ctgtccaaacaaccactttggaatcacctgctgaattattacaaggagcagaaagttcta
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccgaaaa
cttgtcaatactatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaagctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgattagtgccggccccagccacgtcactgct
atgaacattcctatccctttcaacctcgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaacggaccagctgcaggacgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
