Cygnus atratus (black swan): 118260741
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Entry
118260741 CDS
T09349
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118260741 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118260741 (PCF11)
03019 Messenger RNA biogenesis [BR:
cata03019
]
118260741 (PCF11)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118260741 (PCF11)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118260741 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
118260741
NCBI-ProteinID:
XP_035427091
EnsemblRapid:
ENSACYG00000013639
LinkDB
All DBs
Position
1:complement(201089048..201110337)
Genome browser
AA seq
1690 aa
AA seq
DB search
MSAPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKPHVSQTPHMTVKPPHQTSVQSEKIKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKASKTSQAEKQNSTKQEKLKAGEKIQKKELDQSE
AKSKSPSPLKNKLPNTKDTKNQESESTKVSEISKRDPRLKRHLQEKPEGKEDEVKEKRRN
VEKKEKEEHKTCEHRPVGSRNKVINGVVQKQDTPTEESEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEATQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSAKASPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQSEEHQALGKSPHQRHRENWTAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFPDNLSPLESRRRLEEQNATKGARGSKTFDPYDSWGESE
EFRDALRQQGKGTPEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYED
PEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPPAARVGVDGPGSPFVDGPAAG
SNSRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFEGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHG
QPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHG
QPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGAGGLRFDGPLGRTGPRFDGCHAGF
DGQPGQLSLLQRFDGIHGQPGPRFERAPGQQGQPRFDTAIPQRFDGPHQPASRFDLPLGL
QGARFENVANHPASRLEMSPYGQGGPFVDHPSQGYSGPSHGMQFQRPDIFDGSPGPNFNG
PAGPGAQNFSLRASGHYFDEKNLQGPQYGNFNSMAVGSNQVSLMSAQPGPYGQGQQYLPN
PGSFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAA
EEEDDDQSDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLD
WHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEA
AKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQ
NTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPAST
DIKTEPDESI
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagggcagcgctggtagcagcgaggcccgggaggacgcgtgtcgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggctgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtttctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagccacatgtgtctcagacacct
catatgacagttaaaccacctcatcagacttctgtgcaatctgaaaaaattaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacaca
accagtcagtctgataccaaggcaagcaaaacatcacaggctgaaaaacaaaactccaca
aagcaagagaaattgaaagcaggtgaaaaaatacagaagaaagagcttgatcagtcagaa
gcaaaatctaaatcaccatctcctttgaaaaacaagttacccaatactaaggatactaaa
aaccaggaaagtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagactgaaa
agacatcttcaagaaaagccagagggcaaggaggatgaggtgaaagagaagaggagaaat
gtagagaaaaaagaaaaagaggaacataagacgtgtgaacatagaccagtaggcagcaga
aataaagtaattaatggtgttgttcagaaacaagacacacctacagaagaatcagaaaaa
cagggtggaaaacaagggagatcaagtaacagaaaacggtcacgatcacgctctcctaag
tcacggtcaccatctacacattctccaaaaagaagagagaggaggtcacccaaaagaaga
ctcagaagcttatctcccacttcgtcaactcctaaaattggaaagatacgtcagataggt
cctaagcagtctcatgttgaagaagccacacaggcagcaagagatgaaagaaattctaat
aagcggaatgtgaaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaagac
aggcctcaagaaacagcaagtcagcattctgcaaaagcttctcccgatccaaaggagaat
gcagaaaactggcagggatccaaagcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcgcagcagagtgaagaacaccaagcgcttggtaaatctcctcaccaaagacac
cgggaaaactggaccgctgctaaaggaattttatcaccccgagcaccaaagcagcagcac
aggttaagtgtggatgccaatttacaaattcccaaagaattgacatctgcaagcaagaga
gaattacttaaaaaggccaatgatcgcttagcatctggtgaaataactcaagatgaattc
ctcatggtagctcatcagattcgacagctgttccagtaccaggaagggaagcacagatgt
aatgtgtgggatagccctacagaggagaaatgcgttttgaaaaagaaacctcttctatct
gatgcagaattaacatactatgaacacaaagctaaattaaaaagaacccaagttcagcat
tcattatcaaggcttgatctgttggatcccgatgatattttggattatcatctacctgat
gcattgctttctggaatagaatgtgagcaagcaaaagcgaaacgtggagtacaatttgac
agaaaagagccatttggagaaagatctaggaggcattctcctgtaagtggcactaacaga
ccttttcctgataacctttcaccgcttgagagtcgacgaagacttgaggaacaaaatgct
accaaaggagcaagaggttctaaaaccttcgatccttacgacagctggggagaatcagag
gaatttagagatgctctcagacaacagggaaaaggcacaccggagttccagaaaatagac
ggtgacgcaatctgcagatttgataatcgtgaagaaagacagcttctcgggcaagctggt
gttcgagaggaaccaagatcgccattcagtgagcgtttcaaaagagctaggtatgaggat
ccggagaaagcaccatttccagaaagtccaggatcaagatttggaggcattgaagctaag
cagagaataagtgcactaatggaagacagacctctatttgatggctcacctagaccacct
gctgcaagggttggggtagatggaccaggaagtccttttgttgatggtcctgctgctggt
tcaaattctcgaattgatgggccacctggacaggctgctctgagatttgaggggccgttg
gtcggagcaggtgcatcacagtttgatggaccactggcgggggcagggggagcaggagcc
ttaagatttgaagggccgccagggcagctggcaggggctctcagatttgaaggaccccca
ggacaggttggaggaggaggtccactgaggtttgagggacctcttgggcctttgcgcttt
gaggggcctgcaggccagcctgtaggtggtcctagatttgaaggacccggagttggtctc
aggtttgacggacctcgtggtcagccttcaggtggtctcaggtttgaggggcctcatggt
caacctctggggcctcgaggtcaaccagggggtggtctcaggtttgagggaccccatggt
cagcccttggggcctcatggtcaaccagggggtggtctcaggtttgaggggccacattta
cagccattggggccccatggtcaacctggaggtggcctcagatttgaggggccgcatggg
cagcctatggggccacatggaccatcagggggcgggctcagatttgagggaccacatgga
ccaccaggtgtgggtcctaggttgattgacggaccagtacaccagggagctggtggactt
agatttgatggtcctctgggacggacgggtccaagattcgatggctgtcatgctggattt
gatggtcagcctggacagctatctcttttgcaaagatttgatggaattcacggacagcct
ggcccaagatttgaaagggcacctggccagcagggacagccacgatttgatacagccata
cctcaaagatttgatggtcctcaccagccagcctcaaggtttgacctgccccttggcctt
caaggtgcaaggttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcgcca
tacggacaaggtggtccgtttgttgatcatcccagccagggctacagtgggccatctcat
gggatgcagttccagaggcctgacatatttgatggttcgccaggaccaaatttcaatggg
ccagctggcccaggagcacagaatttttcattgagagcatctggacattattttgatgaa
aaaaatcttcagggtcctcaatatggaaacttcaatagtatggcagtgggaagtaatcag
gtttcgctcatgtctgctcagccaggaccttatggccaaggtcaacagtatttgccaaat
cctggaagctttgttcagaaccctgcaggaggccttccacattcatatcctgataaccac
cttggccagcttgatgtcaatgaattgtttgctaagctgttgtcaacaggaattctcaaa
ctgtcaaaaacggattccacttcagcacaagtgaacgaaacatcagcccagccagctgct
gaagaggaagatgatgaccagagtgatcaagatgtcccagacctcacgaactttacggtt
gaagaactcagacagcgttatgatagtgttattaatcgactgtacactggaattcagtgt
tactcgtgtggaatgagatttactacttcacagacagatgtttatgccgatcatttagat
tggcattatcgccagaaccgcacagaaaaagacgttagcagaaaaattacgcacagaagg
tggtactacagtttaacagattggattgaatttgaagaaatagctgatctagaggaacgt
gcaaaaagccaattttttgaaaaagcccatgaagaagtcgtgctcaagacacaagaagct
gcaaaagagaaagagtttcagagtgtccctgctggaccagctggagcagttgaaagctgt
gaaatttgccaagagcaatttgaacaatattgggacgaagaagaggaagagtggcaccta
aagaatgctatacgagtagatgaaaagatttaccatccatcttgttatgaagactaccaa
aacacatcatcatttgattgcacaccatctcccagcaagactcctgtagaaaatcctcta
aatattatgttgaacattgttaaacaagaaacacaagagtcctgtgactcgcctaaagtc
aaagaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctaca
gatattaaaacggaacctgatgagtctatttaa
DBGET
integrated database retrieval system
