Catellatospora sp. IY07-71: CS0771_63110
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Entry
CS0771_63110 CDS
T07191
Symbol
lig_3
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cati
Catellatospora sp. IY07-71
Pathway
cati03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CS0771_63110 (lig_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cati03400
]
CS0771_63110 (lig_3)
Enzymes [BR:
cati01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CS0771_63110 (lig_3)
DNA repair and recombination proteins [BR:
cati03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CS0771_63110 (lig_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BCJ76767
UniProt:
A0A810NVF2
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All DBs
Position
7052610..7054229
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AA seq
539 aa
AA seq
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MNATATAPDRLTAYRRKRDFERTPEPAGQPGPAAGDGSRAFVVQRHRARRTHYDFRLEID
GVLVSWAVPKGPTLDPEVRRIAVHVEDHPLEYFDFEGVIPAGQYGAGDVIVWDAGTWQPG
PGKGGETDPGRAVRAGELHLDLFGQKLRGRFVLVRTGPAGSGKEDWLLLHKHDEFAVPGW
SAEEHPRSVLSGRTNDDVKADPDRLWRSGAPAARAAVTLRAREVRPDELAGLDALPPGGG
RWHVFGRDLRVTNLDKILFPGRPGEDDPVSKRDLLRYTAQIAPTALPYLLRRALNLHRYP
NGAQSKGFWHKQLPEHAPEWLPRWENPDADPGETTTYLVVDEPAALLWAANFGALEWHPW
TSLVEHPQLPTYALVDLDPGERTGWDDLLVLARLHRTAFEHLGVTARAKVTGRRGIQIWV
PIAAGPDFDDTRAWVERLSRTVGAVVPELVSWKWQKAQRGGLARLDYTQNAINKTLVGPY
SPRPAPGAPVSAPIAWEELDDPALRPDGFTIRTMPQRVAEHGDLFHDVLDHPQQLPALG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcgacagcgaccgcgccggaccggctcaccgcgtaccggcggaaacgggatttc
gagcgcacgccggagccggccgggcagcccgggccggcggcgggcgacggttcccgcgcc
ttcgtggtgcagcgtcaccgcgcccgccgcacccactacgacttccggctggagatcgac
ggggtgctggtcagctgggcggtgccgaaaggcccgacgctggatccggaggtacgccgg
atcgccgtccacgtcgaggaccacccgctggagtacttcgacttcgagggcgtcatcccc
gccggccagtacggcgccggagacgtgatcgtctgggacgcgggcacctggcagccggga
cccggcaagggcggcgagaccgatccgggccgcgccgtacgcgcgggcgagctgcacctg
gacctgttcgggcagaagctgcgcggcaggttcgtgctggtgcgcaccggcccggcgggc
tcgggcaaggaggactggctgctgctgcacaagcacgacgagttcgcggtgcccggctgg
agcgccgaggagcatccgcgctcggtgctgtccggccgcaccaacgacgacgtcaaggcg
gacccggaccggttgtggcgctccggcgcgccggccgcgcgggccgccgtgaccctgcgg
gcccgcgaggtgcggcccgacgagctggccggcctggacgcgctgcccccgggtggcggc
aggtggcatgtgttcggccgggacctgcgggtgacgaacctcgacaagatcctgttcccg
ggccgccccggtgaggacgacccggtcagcaagcgcgacctgctgcgatataccgcgcag
atcgcgccgaccgcgctgccctacctgctccggcgcgccctgaacctgcaccgctacccc
aacggcgcgcagagcaagggcttctggcacaagcagctgcccgaacacgcgccggagtgg
ctgccccgctgggagaacccggacgcggatccgggcgagacgaccacctacctggtcgtg
gacgagcctgccgcgctgctgtgggcggcgaacttcggcgcgctcgagtggcacccgtgg
acgtccctggtcgagcacccgcagctgccgacgtacgcgctggtcgacctcgaccccggt
gagcgcaccggctgggacgacctgctggtgctggcgcggctgcaccgcaccgcgttcgag
cacctgggggtcaccgcgcgggccaaggtgaccggccgccgcggcatccagatctgggtg
ccgatcgccgccggcccggacttcgacgacacgcgcgcctgggtggagcggctctcgcgc
acggtgggcgcggtcgtgccggagctggtcagctggaagtggcagaaggcgcagcggggc
ggcctggcccggctcgactacacgcagaacgcgatcaacaagacgctggtcggcccgtac
agtccccgtccggcgcccggcgcacccgtgtcggcgccgatcgcgtgggaggagctggac
gatccggcgctgcgcccggacggcttcaccatccgcaccatgccgcagcgggtggccgag
cacggcgacctgttccacgacgtgctcgaccacccgcagcaactgcctgcgctcggctag
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