Corynebacterium atrinae: CATRI_04020
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Entry
CATRI_04020 CDS
T09346
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CATRI_04020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
catr03400
]
CATRI_04020 (mfd)
Enzymes [BR:
catr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CATRI_04020 (mfd)
DNA repair and recombination proteins [BR:
catr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CATRI_04020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WJY62901
LinkDB
All DBs
Position
799079..802711
Genome browser
AA seq
1210 aa
AA seq
DB search
MLAGLLKVAATDPKLKGMLTHRGEPQLHLQGIDQTRPWAVGALAQHSPVLVVTATGREAE
DLTAELRALLGDKVAWFPSWETLPHERLSPGADTIGRRAQVLDQLIDARVSVVVTAARGF
CQPLLESAEGREPIRLAQGQEYDFSALTEQLVFRAYHHVDMVARRGEFATRGGILDIFPT
TADHPVRVEFWGDEVTDIRQFAVADQRTIPDAEVSQVEVYPARELPITQAIAKRAGELAL
EHPGNATLVELLTKVSDRIPADGMEALIPALVDKQMRTLPELMPEGTHVVLVAPEKIRRR
IADLEATDAEFLAAGWEAAAMGATGPIAAEGLDLSASSYRSYESLEVSVRQAGLSWWTFS
PPGMFEGAEGDTLPLDFEPGPTPRGDADGIAAMMSLLLAHTSSGGRAAFIAPAQGAIKRM
VDRFAEQGIPARVATPGWEPSPGEVTLYQAFSHAGVVFPKVRKHRDAEALPLVVITETDL
TGNRVGDIAGAKRRPARRRHRVDPLALKTGDFVVHETHGIGRFLKMAERSINAGDEKSRR
EYIVLEYAPAKRGQPADQLWVPMDSLDLLSKYSGGESPTLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQAAPGHPFAPDSPWQKEMEDNFPFVETEDQMLAIDAVKTDMEATVPM
DRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLATFVERMQGFPITIRG
LSRFTSRQESKEILAGLGDGSVDIVIGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHI
KALRTNVDVLTMSATPIPRTLEMSMAGIREMTTILTPPEDRHPVLTYVGAQEDKQIAASI
RRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMGEEQLESTVQGFWDREY
DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGASL
TETSYDRLATIAQNNDLGAGVAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEA
VEVYKALARGEMPDATDQGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAASTGDADL
QLVVEEMEDRYGPVPEPVSRLLAVARLRHQARRAGVGDIIVQGTRIKIHPVDLPDSKQVR
LKRLFSGSTYRAAAKAIQVSFPKTGNGAGQPNLRDVDLLQWVADFLSKMFDLPEVSVSGE
PMKSTVLSFQ
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgctggcggggctgctcaaggtggcggcgaccgatccgaagctgaagggcatgctcacc
caccgtggcgagccgcagttgcacctgcaggggattgatcagacgcggccgtgggcggtg
ggggcgttggcgcagcactcgccggtcctcgtcgtcacggcgacgggccgggaggcggag
gatctcacggcggagttgcgggcgctgctcggcgacaaggtggcgtggttcccgtcgtgg
gagacgctcccgcatgagcggctcagcccgggcgccgacacgattggccgtcgggcgcag
gtcttagaccagcttatcgacgcccgcgtgtccgtcgtcgtcaccgccgcccgcgggttc
tgccagcccctcctcgaatccgcggagggccgcgagccgattcggctcgcccagggccag
gagtatgacttctccgccctcacggagcagttggtgttccgcgcttaccaccacgtggac
atggtggctcggcgcggtgagttcgctacccgcggcggcatcctcgacatctttccgacg
accgccgatcaccccgtccgcgtcgagttctggggtgatgaggtcactgatattcgccag
ttcgccgtcgccgatcagcgcaccatccccgatgccgaagtctcccaggtggaggtctac
ccggcccgcgagctgcccatcactcaagcgattgccaagcgcgccggggagctcgccctt
gagcaccccggcaacgccaccttggtggagttgttgacgaaggtctccgaccgcattcct
gccgatggcatggaggcgttgattcccgcgctcgtcgataagcagatgcggaccttgccg
gagttgatgccggaggggacgcacgtggtgctcgtggcgccggagaagatccggcggcgc
atcgccgacctggaagccaccgacgccgagtttctcgcggcgggctgggaggccgccgcg
atgggcgcgaccggcccgatcgccgcggagggcctcgacctgtccgcgtcgtcctaccgt
tcctatgaatcgctcgaggtcagcgtgcgtcaggcgggcttgagctggtggaccttctcc
ccgcccggcatgttcgaaggcgcggagggggacaccctgccgctcgacttcgagcccggc
cccaccccgcgtggcgatgccgacgggatcgccgccatgatgtccctcctgctcgcccac
acctcctccggcggacgcgcggccttcatcgcccccgcccagggcgcgatcaaacgcatg
gtggatcgcttcgccgagcagggcatccccgcccgcgtggccacacccggatgggaaccg
tcccccggcgaagtcaccctctaccaggcgttcagccacgccggagtcgtattccccaag
gtgcgcaaacaccgcgacgccgaagccctcccgttagttgtcatcaccgagaccgacctc
accggcaaccgcgtcggcgacatcgccggggccaagcgacggcccgccaggcgacgccac
cgcgtcgaccccctcgccctgaagaccggcgatttcgtcgtgcacgaaacccacggcatc
ggccgcttcctcaagatggccgaacgcagcatcaacgccggcgatgagaaaagccgccgc
gaatacattgtcctcgaatacgcccccgccaaacgcggccaacccgccgaccagctgtgg
gtccccatggattccctcgacctattgtcgaaatactccggcggcgaatccccgactctg
tcgaagatgggcggctccgattggaagaacaccaagaagaaggcccgcgccgccgtccgt
gaaatcgccggcgaactcgtcgagctttacgctaagcgccaggccgcccccggccacccc
ttcgcccccgattcgccctggcagaaggagatggaggataacttccccttcgtcgagacc
gaggaccagatgctggccatcgacgccgtgaaaaccgacatggaggcgactgtccccatg
gaccgggtcatcgtcggcgacgtcggctacggcaaaaccgaggttgccgtccgcgccgcc
ttcaaggccgtgcaagacggcaagcaggtcgccgtcctcgtgcccacgaccctgctcgcc
cagcagcacctggccaccttcgtcgaacggatgcagggtttccccatcactatccgcggg
ctctcgcgctttacctcccggcaggaatcgaaggagatcctcgctggtctgggcgacggg
tccgtcgacatcgttattggcacccaccgcctcctgcagacgggcgtgcactggaagaac
ctcggcctcatcgtcgtcgatgaggagcagcgcttcggcgtcgaacacaaagagcacatc
aaggccctgcgcaccaacgttgatgtgctcaccatgtccgccaccccgatcccgcgcacc
ctggaaatgtcgatggccggcatccgcgagatgaccaccatcctcacaccccccgaggac
cgccaccccgtcctcacctacgtcggcgcccaagaggacaagcagatcgccgcctccatc
cgccgcgaattgcttcgcgacggccaagtattcttcatccacaacaaagtcgccgacatc
gaaaagaaagcccgcgagctccgcgacctcgtccccgaagcccgcatcgtcgtcgcccac
ggccagatgggggaggagcagctcgaatccaccgtccaagggttctgggaccgcgaatac
gacgtcctcgtttgcaccaccatcgtcgaaaccggcctcgacatcgccaacgccaacacc
ctcatcgtggaaaatgcccaccacatgggcctttcccagctccatcagctgcgcggtcgc
gtcggacgatcccgcgagcgcggctacgcctacttcctctaccccaagggcgcctcactc
accgaaacttcctacgaccgcctggccaccatcgcccagaacaacgacctcggggccggc
gtggccgtcgcgatgaaagaccttgagatgcgcggcgccggtaacgtcctcggcgcccaa
caatccggccacatcgccggcgtcggcttcgacctctacgtccgcctcgtcggcgaggcc
gtcgaggtctacaaggccttagcccgcggcgaaatgcccgacgccaccgaccaaggtccg
aaggaaatccgcatcgacctccccgtcgacgcccacatccccgagtcctacatcaactcc
gaacgcctccgcctcgaggtctaccgcaagctcgccgcctccaccggcgacgccgacctc
cagctcgtcgtcgaagagatggaagaccgctacggccccgtccccgaacccgtctctcgc
ctgctggccgtcgcacgcctgcgccaccaggctcggcgcgccggggtcggcgacatcatc
gtccagggcacccgcatcaaaatccaccccgtcgacctgcccgattccaaacaagtccgc
ctcaaacgcctcttttccggctccacctatcgggccgccgccaaagccatccaggtgtcc
ttccccaagaccggcaacggcgcaggccaacccaacctccgcgacgttgacctgctgcaa
tgggtcgccgacttcctctccaagatgttcgacctacctgaggtgtccgtcagtggggag
cccatgaaatccaccgttttgagcttccaatag
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