Catenovulum sp. TS8: OLW01_10610
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Entry
OLW01_10610 CDS
T08659
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
catt
Catenovulum sp. TS8
Pathway
catt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
catt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OLW01_10610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
catt03400
]
OLW01_10610 (mfd)
Enzymes [BR:
catt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLW01_10610 (mfd)
DNA repair and recombination proteins [BR:
catt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OLW01_10610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AroM
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WAJ69608
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All DBs
Position
2433899..2437384
Genome browser
AA seq
1161 aa
AA seq
DB search
MTLCEILTPSRPKSSSKNTADIIRWGQLHGSSQAIAISQLALSQTEPVLLITPDTSSALK
LWAEIDSVLADETLDAYFFPDWETLAYDTFSPHQDIISQRLHTLNKLQKKSGVFVVAVNT
LLMKMAPANFLQQYTLILNKNETLDIQQMRERLSKAGYRLVEQVMAHGEFSVRGSLLDLF
PMGSQHPFRIDFFDDEVDSIRLFDPETQRSGDAIDSIDLLPAHEFPTDETGIETFRQNWR
AQFDPSTDKESIYYQVSKKIMPAGIEYYLPLFFETTASLFDYLPSQSTLVLSSEIQTHAE
HFQQEVNKRYENRRYDKQRPLLAPNQLFLTTDELFAKLKQFPRVQVSTSTVEDKAGRTNF
ATTPIGEIAVNAQLKQPLAALTQFIEAQTDRVLFLVESQGRRETLQELLTPAKLKLKNQT
SVQDFVTSNDKLGVCISELEHSFVATVNQQRIAFITETELLGNRVIQRTRKNKAKGGVTT
TDAVVKNLAELTHGQAVVHINHGVGRYSGLQTIDAGGVPTEFVTLEYADSKLYVPVSSLH
LIARYTGGDADHAPLNKLSSDAWDKAKRKALEKVRDVAADLLDIYARRSAKPGFSFKLDK
NDYRKFSAGFPFEETEDQQNAIQNVLSDMKSANAMDRLVCGDVGFGKTEVAMRAAFAAVS
ESKQVAVLVPTTLLAQQHYDNFKDRFADWPIKVEVLSRFKSTKQQNAALAELAEGKIDII
IGTHKLLSKDIKFSDLGLLIVDEEHRFGVKQKELIKSRRADVDILTLTATPIPRTLNMAM
SGMRDLSIIATPPKKRLAVKTFVRQYDENIVKEAVSREIMRGGQVYFLHNAVETIDKTAQ
TIQELVPEANVIVAHGQMRERELERVMSEFYHQRYNVLVCTTIIETGIDVPSANTIILDR
ADNFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAQKRLAAIENLEDLGAGFALAT
HDLEIRGAGELLGEDQSGQISSIGFSLYMDMLEQAVEALKEGREPSLDDVLQNQTEVELR
IPALFPDEYIADVNLRLSLYKRLASCKTANELDDFQVELIDRFGLLPDAAKNLIKVNLLR
IKASQLSIKRLEAGPRGGVIEFSQQTKIDPGFIIGLIQSQPQYYSMAGPDKLRFNINVED
TRERIKLVDSMLNDFAQKLTA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacactttgtgaaatcttaactccgagccgcccaaaatcttcatctaaaaataccgcc
gacattatccgttgggggcagttacacggcagcagccaagctatcgcgataagtcagctc
gctttatcgcaaactgagccggttttactgattacaccagataccagcagcgcgttaaaa
ttgtgggctgaaatcgactccgtattagcagacgaaacactagatgcgtactttttccct
gactgggaaaccttagcatatgacaccttttcgcctcaccaagatatcatttcacaacgt
ttacataccttaaataagctacaaaaaaaatcaggcgtatttgttgttgccgtcaatacc
ctattgatgaaaatggcccctgctaattttttacaacaatacacgcttattttaaataaa
aacgagacacttgatatacaacaaatgcgcgagcgtttaagtaaagcgggctaccgtttg
gttgaacaagtcatggcgcacggtgagtttagcgttcgcggctcgttactcgacctattt
cctatgggtagccaacatccatttagaattgatttttttgatgatgaagttgattcaatt
cgtttgtttgatccggaaactcagcgcagcggcgatgccattgattcaattgatttattg
cccgcgcatgaatttccaactgatgaaaccggcattgaaacttttcgtcaaaactggcga
gcacaatttgatcccagtacagataaagagtctatttactatcaagtcagtaaaaaaatt
atgccggccggtattgaatattatttaccactattttttgaaacgacggccagcttattt
gattacctacccagccagagcacgctcgtattaagcagtgaaattcaaacgcacgcagag
cattttcaacaagaagttaataaaagatacgagaaccgaaggtacgataaacaaaggcca
ttgttagcgcccaatcagttatttttaaccacagacgaattgtttgctaagttaaagcaa
tttcctcgtgtgcaggtatccacaagcactgtagaagataaagccggaagaactaacttt
gctaccacaccaattggcgaaattgcagtaaacgcccaattaaaacaacctttagcggca
ttaacccaatttattgaggctcaaactgatcgggttttgtttttggtggaatctcaaggc
cgacgagaaaccttacaagaattactcaccccagctaagctaaaacttaaaaatcaaacc
agtgtacaagactttgttaccagtaatgataagctaggcgtttgtatttcagagcttgaa
catagttttgtcgcaaccgttaatcagcagcgtatcgccttcattactgaaactgagtta
ttgggtaatagagtaatccaacgcactcgcaaaaataaagcaaaaggcggtgttaccaca
acagatgcggtggttaaaaacttagcagaactaacacatggccaagcggttgtgcatatt
aatcacggtgtaggccgttatagcggtttacaaacaatagatgctggcggtgtgcctacc
gaatttgttactttagaatacgcagattcaaaactatatgtgcccgtttcctctctacat
ttaattgcccgctatactggcggtgatgccgaccatgctccgctgaataaactcagcagt
gacgcgtgggacaaagccaaacgcaaagcgttagaaaaagtacgagatgtagcggctgat
ttactagatatatacgcccgtcgcagtgccaagccgggcttttcattcaaactggataaa
aacgattaccgcaaatttagcgcaggatttccgtttgaagaaacagaagatcaacaaaat
gcaattcaaaatgtgttatcagacatgaaatcagccaatgcaatggacagattggtgtgt
ggtgatgtcggctttggtaaaacagaagtagccatgcgagcagctttcgcagcagttagc
gagagcaaacaagtagcagttttagtccctaccacgctccttgctcagcaacattatgat
aattttaaagacaggtttgcagattggccaattaaagttgaagtattatctcgcttcaaa
agcactaaacaacaaaatgcggcgctagctgaactagccgaaggcaaaattgatattatt
attggtacgcataaactcctatcaaaagacattaagttttcagacttaggcctattaatt
gtcgatgaagaacacagatttggagttaaacaaaaagaattaattaaatctcgtcgagct
gatgtcgatattttaaccttgacggcgaccccaatcccaagaactttaaatatggccatg
agtggcatgcgggatttatctattatcgccacgcctccgaaaaaacgattggccgtgaaa
acctttgttcgtcaatacgatgagaatatagttaaagaagccgtatcacgtgaaataatg
cgcggcggtcaggtttattttttacacaacgcagtcgaaacgatagataaaacggcacaa
accattcaagagctggtgccagaagccaatgtaattgtggctcacggtcaaatgcgagaa
cgtgaacttgaacgcgtcatgtcagaattttaccaccaaagatacaatgttttagtctgt
accaccattattgaaacagggattgatgtaccaagcgccaataccattattttagaccga
gccgataattttggtttagcccagcttcaccaattaagaggccgagttggtcgttcacat
caccaagcttatgcatatttgttgacaccgcatccaaagcggatgacgaaagacgcccaa
aagcgccttgccgctattgaaaatttagaagatttaggagcaggctttgcgctagccacc
cacgatttagaaattagaggcgctggggagttattaggcgaagatcaaagtgggcaaatt
agttctatcggttttagcttatatatggatatgttagagcaagcagtagaagccttaaaa
gagggtcgagaaccttcgcttgacgatgtactacaaaatcaaactgaagtagagttaaga
atacctgccctatttccggacgaatacattgccgatgtaaacctgcgtttgtcgctgtat
aaacgtttagcgagctgtaaaaccgctaatgaattagatgattttcaagttgaattaatt
gaccgttttggtttattacccgacgcggctaaaaacctgattaaagttaatttacttcgt
ataaaagccagtcagttatctataaaacgtttagaagctggtcccagaggaggagtaatt
gaatttagtcaacaaactaaaattgaccctggttttattattggcttgattcaatcacaa
cctcaatattattcgatggctggaccagataaattaaggtttaatattaacgtggaagat
acccgagagcggatcaaactggtagactctatgttaaatgacttcgcgcaaaaactaacg
gcttaa
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